Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_P07
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   140   1e-35
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   140   1e-35
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.1  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  140 bits (340), Expect = 1e-35
 Identities = 63/73 (86%), Positives = 69/73 (94%)
 Frame = +2

Query: 314 IERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 493
           IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALN
Sbjct: 31  IERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALN 90

Query: 494 FAFKDKYKQVFLG 532
           FAFKDKYKQVFLG
Sbjct: 91  FAFKDKYKQVFLG 103



 Score =  107 bits (256), Expect = 2e-25
 Identities = 53/92 (57%), Positives = 62/92 (67%)
 Frame = +3

Query: 540 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 719
           DK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++K
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165

Query: 720 IFKSDGLIGSVQXFXVCPCKVSSSTGASYFGF 815
           IFK+DG+ G  + F V    +     A+YFGF
Sbjct: 166 IFKADGITGLYRGFGVSVQGIIIYR-AAYFGF 196



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKT 300
           MS LADPVAFAKDFLAGG++AA+SKT
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 624 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 737
           YP D  R R+    G+   +  +    +C + I+K++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 380 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 469
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  140 bits (340), Expect = 1e-35
 Identities = 63/73 (86%), Positives = 69/73 (94%)
 Frame = +2

Query: 314 IERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALN 493
           IERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALN
Sbjct: 31  IERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALN 90

Query: 494 FAFKDKYKQVFLG 532
           FAFKDKYKQVFLG
Sbjct: 91  FAFKDKYKQVFLG 103



 Score =  107 bits (256), Expect = 2e-25
 Identities = 53/92 (57%), Positives = 62/92 (67%)
 Frame = +3

Query: 540 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISK 719
           DK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++K
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTK 165

Query: 720 IFKSDGLIGSVQXFXVCPCKVSSSTGASYFGF 815
           IFK+DG+ G  + F V    +     A+YFGF
Sbjct: 166 IFKADGITGLYRGFGVSVQGIIIYR-AAYFGF 196



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKT 300
           MS LADPVAFAKDFLAGG++AA+SKT
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKT 26



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 624 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 737
           YP D  R R+    G+   +  +    +C + I+K++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEG 268



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 380 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 469
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 265 LAGGISAAVSKTAXSTHRACQAAAPSTARQQADRRRPALQGYRRCLR 405
           + GGI   + + A   H+  +      AR  AD+ R A++  R+ LR
Sbjct: 834 IIGGIGLIIIEVAYKKHQIRKQKKMELARHAADKWRGAIE-KRKTLR 879


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 603 LRRHHRRPDYQRSNARTASSCQHRP 529
           L+RHH   ++      TA    HRP
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHHRP 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,947
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)