Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_P03
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   120   3e-28
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   4.4  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  120 bits (289), Expect = 3e-28
 Identities = 75/191 (39%), Positives = 103/191 (53%), Gaps = 1/191 (0%)
 Frame = +3

Query: 159 RLQALRALMSSQRPVLAAYIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 338
           RL  LR LM  +   L  Y++P+ DAH+SEY   ADARR +IS F GSAG AV+  + A 
Sbjct: 8   RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAA 65

Query: 339 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 518
           ++TDGRY+ Q  +++D   WTLMKQ     PT E++     K  + VG+D   +T     
Sbjct: 66  LFTDGRYFNQASQQLD-ENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAK 124

Query: 519 PIQTAL-KKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAEL 695
            ++ +L  K  A LV   +NLVD   I  G   PK    +L    ++Y G    EK+  L
Sbjct: 125 ALRESLFLKSGAVLVGDHDNLVD---IVWGASRPKEPLEKLIVQEIKYAGLGVDEKLHNL 181

Query: 696 RRKMVEKKASA 728
           R  M E+K  A
Sbjct: 182 REAMKEQKIEA 192



 Score = 32.7 bits (71), Expect = 0.066
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 715 KKLLPLVLTXLDDIAYTLNLRGSXIEYNP 801
           +K+   V++ LD++A+  NLRG+ + YNP
Sbjct: 188 QKIEAFVVSMLDEVAWLYNLRGADVPYNP 216


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 312 AVVTSSQALVWTDGRYYTQFEREVDL 389
           AV T +  ++WT G Y+   ++E+++
Sbjct: 317 AVSTENSVMLWTTGNYHWYLKKEINI 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,448
Number of Sequences: 5004
Number of extensions: 69387
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)