Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_P01
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 33 0.37
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 33 0.37
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 2.0
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 30 2.6
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 29 4.6
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.6
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 6.0
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 6.0
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 29 6.0
03_05_0431 + 24221881-24224586 29 6.0
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 29 6.0
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 28 8.0
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 28 8.0
03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484 28 8.0
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +2
Query: 35 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQ 214
D AKAFD V L L G PD + I++ L + G + G+ Q
Sbjct: 42 DFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQ 101
Query: 215 GSALSPXI 238
G LSP +
Sbjct: 102 GDPLSPYL 109
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 26 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 205
L D KAFD + H+ ++ + +MG P + + ++ S S + G + G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 206 VPQGSALS 229
V QG LS
Sbjct: 514 VRQGVPLS 521
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 533 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 435
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 344 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFGHPTP 484
SS DRS+ P P+ +R PH + SG+ +K S S+ + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -2
Query: 774 GAGCVSEHYACIRHXRGVCKFCRELPYCGGTVCFDYKALDRVVLE*TRRGRVPFLYGDGM 595
GA C +HY+C H +C + KAL R + + + FL+G+G
Sbjct: 411 GATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTL----AKPNLSFLFGNGK 466
Query: 594 SS 589
S
Sbjct: 467 KS 468
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 318 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 452
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 353 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFGHPTP 484
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 170 GTRSRPRQLTAGVPQGSALSP 232
G RSRPR+ AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 744 CIRHXRGVCKFCRE--LPYCGGTVCFDYKALDR 652
C+ + G C+ CR+ YC G V F Y ++DR
Sbjct: 108 CMVNTCGGCESCRDGCENYCSGGVVFTYNSVDR 140
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 631 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 536
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 341 ASSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFGHPT 481
ASS +P +SS V ++ + H P + S K S HFG+ T
Sbjct: 154 ASSISPPKSSQD-KVCHDMLDTHVPEKSMSAVSNKDETSSVHFGYYT 199
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 114 SLSGTPMLYS-L*IKPLCQTLSNAFAMSKKRAPVGICPV 1
SL+ P+ Y L KP C L N FA A + ICP+
Sbjct: 54 SLASPPLPYPPLRCKPPCSALLNPFARVDFAAKIWICPL 92
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +2
Query: 35 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQ 214
D KAFD V + L L G P+ + I+ LS+ + G R G+ Q
Sbjct: 1057 DFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPGRWICCKKGLLQ 1116
Query: 215 GSALS 229
G LS
Sbjct: 1117 GDPLS 1121
>03_02_0552 + 9416362-9417790,9417827-9417936,9418032-9418484
Length = 663
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 35 DIAKAFDKVWHNGLIYKLYNMG-VPDRLVL 121
D+A+AF+ V H G + +YN+G V +R V+
Sbjct: 230 DVAEAFEVVLHKGEVGHVYNIGTVKERRVI 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,734,749
Number of Sequences: 37544
Number of extensions: 565762
Number of successful extensions: 1499
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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