Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_P01
(835 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 64 2e-10
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 40 0.002
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 36 0.036
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 36 0.036
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 36 0.047
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.33
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 30 2.3
Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical p... 29 3.1
AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical... 29 3.1
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +2
Query: 26 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 205
++ D +KAFD++ H+ L+ KL ++ L++ + +FLSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 206 VPQGSALSPXI 238
VPQG+ LSP +
Sbjct: 77 VPQGAVLSPLL 87
Score = 41.1 bits (92), Expect = 0.001
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Frame = +3
Query: 234 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 407
LLF +Y+NDI +A FADDT +Y S K LQ A+ + W + ++
Sbjct: 86 LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144
Query: 408 INPTKSAAVLFKRGRPPNITSGIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 587
+N +K+ ++T G RR + L G PI + + LG +
Sbjct: 145 LNQSKTV----------HVTVG----KRRIDFK----YHLDGYPIERKAITRDLGFLISE 186
Query: 588 GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 728
+ F H + + A F L ++ + +K + + LYKT IRP
Sbjct: 187 KLDFSDHWRKCINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRP 230
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 44 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGS 220
KAFD+V H+ L+ KL++ G+ DFLS+R+F +V +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 221 ALSPXI 238
P +
Sbjct: 62 VSGPFL 67
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 537 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 716
PI + + LG+ D +TF+PHIK + + L R +L S L L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244
Query: 717 CIRP 728
I P
Sbjct: 245 YILP 248
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/125 (22%), Positives = 55/125 (44%)
Frame = +3
Query: 237 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 416
LF+ Y+ D+P +T L +ADD +I +K+ ++Q+ + + ++ ++ + I+
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602
Query: 417 TKSAAVLFKRGRPPNITSGIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMT 596
KS +F + T I PIP ++ K LG+TL+
Sbjct: 603 EKSTVTVFSCDPKEHKTK--------------PDIYWMDDPIPVINAPKLLGITLNTMTG 648
Query: 597 FRPHI 611
+ H+
Sbjct: 649 TKDHV 653
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 35 DIAKAFDKVWHNGLIYKLYN-MGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVP 211
D+ AFDKV L L G+ ++ L + ++L R R + S+ L GVP
Sbjct: 475 DLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVP 534
Query: 212 QGSALSPXII*F 247
QGS +SP + F
Sbjct: 535 QGSVISPNLFTF 546
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 35.9 bits (79), Expect = 0.036
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +2
Query: 8 QIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRP 187
QIP +F D KAFD V H + L G + ++++ N + + R
Sbjct: 683 QIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNF-TPFHRPVA 741
Query: 188 RQLTAGVPQGSALSPXI 238
+T GV QG +SP +
Sbjct: 742 VPVTKGVRQGDPISPNL 758
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 35.9 bits (79), Expect = 0.036
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +2
Query: 8 QIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRP 187
QIP +F D KAFD V H + L G + ++++ N + + R
Sbjct: 422 QIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNF-TPFHRPVA 480
Query: 188 RQLTAGVPQGSALSPXI 238
+T GV QG +SP +
Sbjct: 481 VPVTKGVRQGDPISPNL 497
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 35.5 bits (78), Expect = 0.047
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +2
Query: 8 QIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRP 187
QIP +F D KAFD V H + L G + ++++ N + + R
Sbjct: 512 QIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECYKNCTTNF-TPFHRPVA 570
Query: 188 RQLTAGVPQGSALSPXI 238
+T GV QG +SP +
Sbjct: 571 VPVTKGVRQGDPISPNL 587
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 26 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 205
+F D KAFD V H + L G + + ++++ N + + R +T G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 206 VPQGSALSPXI 238
V QG +SP +
Sbjct: 99 VRQGDPISPNL 109
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +3
Query: 90 TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLAPVN*P-----PESRKAPRSPRLLFSLY 251
TT TD S + T+ TV IE ELV +P++ P P ++ P+ +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376
Query: 252 INDIPRSPETHLALFADDTAIYYSCRKMSL 341
I I L LF+ AIY+ C+ S+
Sbjct: 377 IPLIIMGSLASLLLFSAGAAIYFGCKLKSM 406
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 83 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPXI 238
KL G+ ++FL NR+F ++ S+ +++GVPQGS P +
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891
>Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 651 LYPMLCSRSKLSLRNKVTLYKTCIRPXHDVCKR 749
LYP+ RS+L L+ + T+Y++ D+ KR
Sbjct: 58 LYPLAVLRSQLQLQKQNTVYRSTFHAYSDISKR 90
>AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 651 LYPMLCSRSKLSLRNKVTLYKTCIRPXHDVCKR 749
LYP+ RS+L L+ + T+Y++ D+ KR
Sbjct: 58 LYPLAVLRSQLQLQKQNTVYRSTFHAYSDISKR 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,950,524
Number of Sequences: 27780
Number of extensions: 433079
Number of successful extensions: 1124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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