Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_O16
         (1006 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.27 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.35 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.35 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    27   0.35 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.35 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    25   1.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 340 GAVALGWCPXEXLWRPDVXLINXAXSTVGDYXSPRPVYXXTASV 471
           G V   + P E +W PD+ L N A    G     + +   T  V
Sbjct: 90  GGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKV 133


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 GAVALGWCPXEXLWRPDVXLINXA 411
           G V +   P + +WRPD+ L N A
Sbjct: 98  GGVKMLHVPSDHIWRPDIVLYNNA 121


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 GAVALGWCPXEXLWRPDVXLINXA 411
           G V +   P + +WRPD+ L N A
Sbjct: 98  GGVKMLHVPSDHIWRPDIVLYNNA 121


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 GAVALGWCPXEXLWRPDVXLINXA 411
           G V +   P + +WRPD+ L N A
Sbjct: 94  GGVEMLHVPSDHIWRPDIVLYNNA 117


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 GAVALGWCPXEXLWRPDVXLINXA 411
           G V + + P E +W PD+ L N A
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA 126


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 GAVALGWCPXEXLWRPDVXLINXA 411
           G + +   P + +W+PD+ L N A
Sbjct: 96  GGIGVLRLPPDKVWKPDIVLFNNA 119


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 195 SPPDSEIXXDLTLXXXHANIRESESTVRXQADLQMNG 305
           +PP  E   D+ L   ++N  +  +T R  A +  NG
Sbjct: 48  TPPQGENMLDMDLRGIYSNRTDFTTTFRPTAGMTFNG 84


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 364 PXEXLWRPDVXLINXA 411
           P E +W PD+ L N A
Sbjct: 98  PSEHIWLPDIVLYNNA 113


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 364 PXEXLWRPDVXLINXA 411
           P   LW+PDV + N A
Sbjct: 101 PPHRLWKPDVLMYNSA 116


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 364 PXEXLWRPDVXLINXA 411
           P   +WRPD  L N A
Sbjct: 83  PYNRVWRPDTILYNNA 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,211
Number of Sequences: 438
Number of extensions: 2540
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)