Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_N24
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.42 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.42 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.8  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 653 TTSQRWSRGSTLRSLNTSRANNHHIKP 573
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 653 TTSQRWSRGSTLRSLNTSRANNHHIKP 573
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 664 TNQPQHPSAGHGEAHYEASTLH 599
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 616 RSVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 714
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 616 RSVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 714
           R +LPR ++  +   LF Y  P  SE ++  ++
Sbjct: 603 RLLLPRGKKEGMPFQLFLYVSPVSSEYNQYNSR 635


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 829 QRCSRRAVFQPMXHWXQCFIPVSWTGATTSGLAVP 725
           ++ S     QP       F+PVS+   T +G+  P
Sbjct: 812 EKLSSSQPMQPPQQNPYMFLPVSYMSTTMAGVIYP 846


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,884
Number of Sequences: 438
Number of extensions: 6099
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)