Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_N02
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.88 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.88 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   1.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 714 PSSLGMAKGVSPPYFK*MMNHKLRAL 791
           P+S+G++  VS P FK ++ H+ RA+
Sbjct: 174 PNSVGVSNEVSLPQFK-VLGHRQRAM 198


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 714 PSSLGMAKGVSPPYFK*MMNHKLRAL 791
           P+S+G++  VS P FK ++ H+ RA+
Sbjct: 113 PNSVGVSNEVSLPQFK-VLGHRQRAM 137


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 569 DHQIPDSI-HQPPQNLTSISINPLXAVLEGVRAGVKASVVIRGSISVSHPLV 721
           D  IP S  + P  N  SIS +     +E ++  VK +  + GS++++  +V
Sbjct: 156 DKPIPASCCNSPENNTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIV 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,201
Number of Sequences: 438
Number of extensions: 4443
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)