Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_M16
(958 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 41 2e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 3e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 37 3e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 34 0.002
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 34 0.002
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 34 0.002
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 33 0.004
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 30 0.036
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 27 0.19
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.7 bits (91), Expect = 2e-05
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Frame = +3
Query: 108 MIDSLLATYERESPPGLQNRSQPDPV-----I*DMLTXVSPESTVRILADLQMNWIXKRL 272
+++ LL++Y P + N S+P V + ++ + A L++ W+ L
Sbjct: 58 LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116
Query: 273 SWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
WN E+ G ++ +LW+PD ++ N A G Y V++NGS
Sbjct: 117 QWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.7 bits (91), Expect = 2e-05
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Frame = +3
Query: 108 MIDSLLATYERESPPGLQNRSQPDPV-----I*DMLTXVSPESTVRILADLQMNWIXKRL 272
+++ LL++Y P + N S+P V + ++ + A L++ W+ L
Sbjct: 58 LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116
Query: 273 SWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
WN E+ G ++ +LW+PD ++ N A G Y V++NGS
Sbjct: 117 QWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W+ L WN E+ G ++ +LW+PD ++ N A G Y V++NGS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W+ L WN E+ G ++ +LW+PD ++ N A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W+ L WN E+ G ++ +LW+PD ++ N A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W+ L WN E+ G ++ +LW+PD ++ N A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W+ L WN E+ G ++ +LW+PD ++ N A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W+ L WN E+ G ++ +LW+PD ++ N A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 36.7 bits (81), Expect = 3e-04
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWG-CNTWLVSSERLWRPDXVLLN-AXATTXGDYALRARVSNNGS 416
L++ W + WN ++G + RLW+PD ++ N A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 35.1 bits (77), Expect = 0.001
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWGCNTWL-VSSERLWRPDXVLLN 356
++ +W +L W+ E+G L V S+ +WRPD VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 34.7 bits (76), Expect = 0.001
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWG-CNTWLVSSERLWRPDXVLLN 356
++ W +L WN ++G +T V SE +W PD VL N
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.3 bits (75), Expect = 0.002
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWGCNTWL-VSSERLWRPDXVLLN 356
++ +W +L W E+G L V S+ +WRPD VL N
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.3 bits (75), Expect = 0.002
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWGCNTWL-VSSERLWRPDXVLLN 356
++ +W +L W E+G L V S+ +WRPD VL N
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYN 119
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 34.3 bits (75), Expect = 0.002
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWGCNTWL-VSSERLWRPDXVLLN 356
++ W +L WN E+G L V SE +W PD VL N
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 33.9 bits (74), Expect = 0.002
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 255 WIXKRLSWNAXEW-GCNTWLVSSERLWRPDXVLLN 356
W L WNA E+ G V R+WRPD +L N
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYN 96
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 33.1 bits (72), Expect = 0.004
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWGCNTWL-VSSERLWRPDXVLLN 356
L+ W + W+ E+G T L V SE +W PD VL N
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYN 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 29.9 bits (64), Expect = 0.036
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 243 LQMNWIXKRLSWNAXEWG-CNTWLVSSERLWRPDXVLLNAXATTXGDYALR 392
L+ W +L W+ ++G + +++W+PD VL N G+Y +R
Sbjct: 79 LRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFN---NADGNYEVR 126
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.5 bits (58), Expect = 0.19
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Frame = +3
Query: 96 SLSLMIDSLLATYERESPPGLQNRSQPDPVI*DMLTX-VSPESTVRILADL----QMNWI 260
++++++++LL YE P + P V ++L + P S + + + + +W
Sbjct: 36 NITMVLENLLMNYENNQLP-THGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWR 94
Query: 261 XKRLSWNAXEWGCNTWLVSSERLWRPDXVLLNAXATTXGDYAL---RARVSNNGSXSCIX 431
RLS+ + + ER+WRPD N + + R+S +G
Sbjct: 95 DSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSM 154
Query: 432 RXDISTPIPM 461
R I PM
Sbjct: 155 RLTIKAKCPM 164
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,408
Number of Sequences: 438
Number of extensions: 4237
Number of successful extensions: 30
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -