Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_M09
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   164   2e-41
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   164   2e-41
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   1.1  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    28   1.9  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.8  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  164 bits (398), Expect = 2e-41
 Identities = 81/173 (46%), Positives = 108/173 (62%)
 Frame = +3

Query: 279 MVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 458
           MV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST-- 141

Query: 459 KSIEKDFKKMIRYRSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 638
           +SI ++ +++ +Y SVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WAREH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 639 PIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRLAHKEATPXXTQGXLGKXACXG 797
            + + S F Q+EMID I            +R   K   P  T   L K AC G
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIG 253



 Score =  117 bits (282), Expect = 2e-27
 Identities = 51/66 (77%), Positives = 57/66 (86%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 208 DRPGFK 225
           DRPG K
Sbjct: 61  DRPGSK 66



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +2

Query: 197 LENLTVPXSKINKKEIVEAVTIIETPP 277
           + +L  P SK++K+EI+EAVTIIETPP
Sbjct: 57  VRDLDRPGSKMHKREILEAVTIIETPP 83


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  164 bits (398), Expect = 2e-41
 Identities = 81/173 (46%), Positives = 108/173 (62%)
 Frame = +3

Query: 279 MVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 458
           MV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST-- 141

Query: 459 KSIEKDFKKMIRYRSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 638
           +SI ++ +++ +Y SVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WAREH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 639 PIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRLAHKEATPXXTQGXLGKXACXG 797
            + + S F Q+EMID I            +R   K   P  T   L K AC G
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIG 253



 Score =  117 bits (282), Expect = 2e-27
 Identities = 51/66 (77%), Positives = 57/66 (86%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 208 DRPGFK 225
           DRPG K
Sbjct: 61  DRPGSK 66



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +2

Query: 197 LENLTVPXSKINKKEIVEAVTIIETPP 277
           + +L  P SK++K+EI+EAVT+IETPP
Sbjct: 57  VRDLDRPGSKMHKREILEAVTVIETPP 83


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 208 DRPGFKNQQERDRGGCHHHRDSSEWFVSVLLDTLRPLMDYAL 333
           +   FK++    + G HH  D  E F++  L TL  L D +L
Sbjct: 90  EEKSFKDEHLAQKKGLHHFADLKEIFLNKNLSTLDGLQDASL 131


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 411 SSCICTSFCR-SDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPFGG 271
           SSCI  +    SD  SL  YA  R S+  + H GS  +     KPFGG
Sbjct: 453 SSCIYFADGNWSDFPSLP-YASHRASSVSIKHNGSSYVVLLAGKPFGG 499


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 304 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 456
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 204 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 40
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,409
Number of Sequences: 5004
Number of extensions: 69546
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)