Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_M06
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.071
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.094
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.22 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.50 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   0.66 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.5  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   4.7  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.7  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.071
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = -2

Query: 881 PPXPPPSXPAXXQIPXXYT*PXXPPTPRL--XPXATDPPNQTHXHPPEXXPPP 729
           PP PPP+       P     P  PP P +   P    PP      PP   PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPI--PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
 Frame = -2

Query: 881 PPXP---PPSXPAXXQIPXXYT*PXXPPTP-RLXPXATDPPNQTHXHPPEXXPPPXXXA- 717
           PP P   PP       IP     P  P  P +  P A   P+     PP+  PPP   A 
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210

Query: 716 -GXVXRKTXGHCHPAFHLPTV 657
                 +      PA H P V
Sbjct: 211 VANTSSRPSSFAPPAGHAPNV 231


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = -2

Query: 812 PPTPRLXPXATDPPNQTHXHPPEXXPPP--XXXAGXVXRKTXGHCHPAFHLPTVXXXHRX 639
           PP     P    PP   H  P E  PPP      G        H  P  H+P     H  
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268

Query: 638 GQIRHIP 618
           G+  H+P
Sbjct: 269 GE--HMP 273



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = -2

Query: 812 PPTPRLXPXATDPPNQTHXHPPEXXPPP--XXXAGXVXRKTXGHCHPAFHLPTVXXXHRX 639
           PP     P    PP   H  P E  PPP      G        H  P  H+P     H  
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 307

Query: 638 GQIRHIP 618
           G+  H+P
Sbjct: 308 GE--HMP 312



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
 Frame = -2

Query: 776 PPNQTHXHPPEXXPPP--XXXAGXVXRKTXGHCHPAFHLPTVXXXHRXGQIRHIP 618
           PP   H  P E  PPP      G        H  P  H+P     H  G+  H+P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE--HMP 260



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/65 (29%), Positives = 22/65 (33%)
 Frame = -2

Query: 812 PPTPRLXPXATDPPNQTHXHPPEXXPPPXXXAGXVXRKTXGHCHPAFHLPTVXXXHRXGQ 633
           PP     P    PP   H  P E  PPP             H  P  H+P     H  G+
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPM-----------HHEPGEHMPPPPMHHEPGE 335

Query: 632 IRHIP 618
             H+P
Sbjct: 336 --HMP 338


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
 Frame = -2

Query: 881 PPXPPPSXP--AXXQIPXXYT*PXXPPTPRLXPXATDPPNQTHXHPPEXXPPP 729
           PP  PPS P  A    P   + P  PP P   P A   P      PP   P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = -2

Query: 881 PPXPPPSXPAXXQIPXXYT*PXXPPTPRLXPXATDPPNQTHXHPPEXXPPP 729
           PP  PPS P    +      P  P  P   P     P      P    PPP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 242 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 343
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -2

Query: 878  PXPPPSXPAXXQIPXXYT*PXXPPTPRLXPXATDPPNQ-THXHPPEXXPP 732
            P   P+ P    IP     P     P   P +T PP+Q +  H P   PP
Sbjct: 1486 PPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPP 1535



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 879  PPPPPLXXRPXPNSP 835
            PPPPP+   P P++P
Sbjct: 1707 PPPPPMSVPPPPSAP 1721



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = -2

Query: 881  PPXPPPSXPAXXQIPXXYT*PXXPPTPRLXPXATDPPNQTHXHPPEXXPPP 729
            P   PP  P     P   + P  PP P   P     P      PP   PPP
Sbjct: 1686 PVSTPPVRPQSAA-PPQMSAPTPPPPPMSVPPPPSAPPMP-AGPPSAPPPP 1734


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 881 PPXPPPSXPAXXQIPXXYT*PXXPPTPRLXPXATDPPNQTHXHP 750
           PP PPP       +P   T P   P P L P  +   +Q   HP
Sbjct: 356 PPPPPPMPAPIYNVPNVPTVPTVSPNPFLQPTFSG-TSQASAHP 398


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 68
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 320 FPCVPTQSFVDPIHLKICQYPHGGL 246
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
 Frame = -2

Query: 872 PPPSXP-----AXXQIPXXYT*PXXPPTPRLXPXATDPPNQTHXHPPEXXPP 732
           PPPS P        Q+   +  P   P P     +  PP  +H   P   PP
Sbjct: 249 PPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPP 300


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 420 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 557
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = -2

Query: 878 PXPPPSXPAXXQIPXXYT*PXXPPTPRLXPXATDPPNQTHXHPPEXXPP 732
           P    S PA  +       P  PPT RL P    P   T   PP   PP
Sbjct: 30  PARTVSTPAFMEPAPVSKKPLPPPTRRL-PRKPLPFRSTSLQPPSSQPP 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,364
Number of Sequences: 5004
Number of extensions: 61921
Number of successful extensions: 272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)