Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_M04
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.89 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.89 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   8.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   8.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 615 GFVG--VLPRDQRWDVVVDLFFYRDPEESEKDEQQARNRLW 731
           GF G  +LPR ++  +   LF Y  P  SE +  Q  +R+W
Sbjct: 599 GFPGRLLLPRGKKEGMPFQLFLYVSPVSSEYN--QYNSRIW 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 615 GFVG--VLPRDQRWDVVVDLFFYRDPEESEKDEQQARNRLW 731
           GF G  +LPR ++  +   LF Y  P  SE +  Q  +R+W
Sbjct: 599 GFPGRLLLPRGKKEGMPFQLFLYVSPVSSEYN--QYNSRIW 637


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 664 STTTSQRWSRGSTPTKPQHFTCQQPPHQTNRV 569
           +TTT+   +  +TP   Q+ +   PP Q + V
Sbjct: 665 TTTTTTTTTTTTTPNTTQNASATTPPPQVDEV 696


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
 Frame = -2

Query: 669 TNQPQHPSAGHGEAH----PRSLSTSRANNHH 586
           T  P H + GHG +H    P    +  A  HH
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHH 442


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 716 GLLFILFTFFRVTVEEQ 666
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 716 GLLFILFTFFRVTVEEQ 666
           G+LF+LF+F R   + Q
Sbjct: 20  GVLFVLFSFLRTRTKLQ 36


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 10  FASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNF-QMETYVYKR 186
           FAS   YT   +   S T+  G+  +AL+   +T+ L  +  L + N+N+   E +V  +
Sbjct: 229 FASDPRYTTFTINGESFTLQSGIFGMALS--PLTQNLYYSA-LSSHNLNYVNTEQFVKSQ 285

Query: 187 -RADGTH 204
            +A+  H
Sbjct: 286 YQANNVH 292


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 629 HTHEASALHVPTTTTS 582
           H H A   H+P T TS
Sbjct: 105 HPHTAMVTHLPQTLTS 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,609
Number of Sequences: 438
Number of extensions: 5709
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)