Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_L22
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 268 6e-73
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 268 7e-73
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 0.99
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 268 bits (658), Expect = 6e-73
Identities = 121/200 (60%), Positives = 156/200 (78%)
Frame = +1
Query: 49 FQHPVMGLWDSIPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+ P G +P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 588
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 589 NGGTIEDKVKWAREHLEKPI 648
NGG++ DKV+WAREH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203
Score = 89.4 bits (212), Expect = 6e-19
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +2
Query: 653 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRXTHKGLRKVACIGXWHPSRVSFXV 832
+ S F Q+EMID I +RW TK+LPR TH+GLRKVACIG WHP+ V + V
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264
Query: 833 TRAGXKXFHHRTEMNKK 883
RAG + HRT++N K
Sbjct: 265 ARAGNAGYMHRTQLNSK 281
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKK 92
MSH KF PRHGS+GF P+K
Sbjct: 1 MSHCKFEQPRHGSLGFLPRK 20
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 268 bits (657), Expect = 7e-73
Identities = 120/200 (60%), Positives = 156/200 (78%)
Frame = +1
Query: 49 FQHPVMGLWDSIPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+ P G +P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 408
K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125
Query: 409 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 588
+ + +SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183
Query: 589 NGGTIEDKVKWAREHLEKPI 648
NGG++ DKV+WAREH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203
Score = 89.4 bits (212), Expect = 6e-19
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +2
Query: 653 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRXTHKGLRKVACIGXWHPSRVSFXV 832
+ S F Q+EMID I +RW TK+LPR TH+GLRKVACIG WHP+ V + V
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTV 264
Query: 833 TRAGXKXFHHRTEMNKK 883
RAG + HRT++N K
Sbjct: 265 ARAGNAGYMHRTQLNSK 281
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 33 MSHRKFSAPRHGSMGFYPKK 92
MSH KF PRHGS+GF P+K
Sbjct: 1 MSHCKFEQPRHGSLGFLPRK 20
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.2 bits (55), Expect(2) = 0.99
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 308 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 460
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
Score = 21.0 bits (42), Expect(2) = 0.99
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 575 WKSNLTVVPSRTK*NGPENIWRNLSLVDSVFAQDEMI 685
W+ N+ S + + + SLVD FA DE I
Sbjct: 277 WEKNIIYDESDVNKTNQSSFFIDKSLVDIDFAFDENI 313
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 502 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 612
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,670,351
Number of Sequences: 5004
Number of extensions: 76197
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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