Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_L19
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 217 APDSCYECRAGKV*AITRRVASLV 288
           A    Y C+A  +  ITR ++SLV
Sbjct: 467 ADTGAYMCQASSIGGITRDISSLV 490


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 692 DGQCLAYNTTHYRDHXCTRKLVRVSLGPSRDTLERP 585
           D Q   Y    + +      +VRV LGP  D   RP
Sbjct: 514 DHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 252 LSRATF--VAGIRRTVSLRVASHRPA 181
           LS A F  +A +  T+ + V SHRPA
Sbjct: 3   LSSAWFEVIAAVLLTILIFVTSHRPA 28


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 385 EMWIDRNALV*LQSVLRSNPQTR 317
           EM +DR  L  L+S++  NP+ R
Sbjct: 325 EMKMDRTELGCLRSIILFNPEVR 347


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 385 EMWIDRNALV*LQSVLRSNPQTR 317
           EM +DR  L  L+S++  NP+ R
Sbjct: 325 EMKMDRTELGCLRSIILFNPEVR 347


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 218 AQYRFASHRIARPGRRVSEK 159
           ++  FAS  ++R GRR+  K
Sbjct: 635 SENNFASQELSREGRRIFHK 654


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 218 AQYRFASHRIARPGRRVSEK 159
           ++  FAS  ++R GRR+  K
Sbjct: 603 SENNFASQELSREGRRIFHK 622


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 332 QPTDPSCSERPRPTRTSDATR 270
           QPT   CS+R RP   + + +
Sbjct: 875 QPTMNKCSDRKRPASQATSVK 895


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,566
Number of Sequences: 438
Number of extensions: 3127
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)