Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_L08
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.4  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    28   1.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   3.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    26   7.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 268 PPRVEPPRSNYTFAGAPFPPRAEVATPP 185
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -3

Query: 253 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 95
           PP SNY  A  P+        P++  A PP   S R R+  P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 94  SDRPDRDRALRTSQRRDV 41
           S RP    A R  +  DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 25/87 (28%), Positives = 32/87 (36%)
 Frame = -3

Query: 475 WHCAVGSLPAILKRYRPKHPWPVNICVSRKVRHPRSRPTQSARTGRTASTVXEAGRRVRQ 296
           W+ AV ++  IL R  P  P P  I   R    P + P  S       + V EA      
Sbjct: 253 WYTAVPTIHQILLRTPPPKPLP-RIRFIRSCSSPLAPPVLSKLEATFRAPVLEAYAMTEA 311

Query: 295 AARPRLQHGPPRVEPPRSNYTFAGAPF 215
           + +      PP V  P S     G PF
Sbjct: 312 SHQMTTNPLPPLVHKPHS----VGKPF 334


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 670  CDMVDSQKSSIAXQDASLPSIVATTRGSESSS 575
            CDM+D+Q   +A    S  S  +  RG++S+S
Sbjct: 1063 CDMMDAQVRDLANAAESQESFYSKARGNDSTS 1094


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 84  GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATSALGGKGAPAKV*FERGGST 260
           G+  D  P PS  R C    H G+ +   +   +TGG +     G G  A V F R GS 
Sbjct: 14  GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68

Query: 261 LGGPC 275
           L   C
Sbjct: 69  LVISC 73


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
 Frame = -3

Query: 382 RHPRSRPTQSARTGRTASTVXEAGRRVRQAARPRLQHGP--PRVEPPRSNYTFAGAPFPP 209
           + P   PT SA     A+       R RQ  R R    P  PRV  P   Y      +PP
Sbjct: 222 KDPVVEPTHSASN---AANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNTPPFGYPP 278

Query: 208 RAEVATPPVIGS 173
               A P   GS
Sbjct: 279 TTSSALPNASGS 290


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 674 GGGGXXXGXLFPFRTDPSPSXRGPEAG 754
           GGG    G   PF+ D S    G EAG
Sbjct: 526 GGGSNSIGMFSPFKADKSVMMLGCEAG 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,035
Number of Sequences: 5004
Number of extensions: 43408
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)