Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_L08
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   6.1  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   6.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   6.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   6.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   6.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   6.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   6.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.1  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   6.1  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 16/65 (24%), Positives = 24/65 (36%)
 Frame = -3

Query: 394  SRKVRHPRSRPTQSARTGRTASTVXEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPF 215
            +R  +   S   Q   + R+ + + +  R  R+   PRL       E  R      G P 
Sbjct: 1306 ARNQQQQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQDSSEDESYRGPSASGGRPV 1365

Query: 214  PPRAE 200
            P R E
Sbjct: 1366 PERPE 1370


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 205 SLRSRTHGFQHTSSRYSRERSCSRDRN 231


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 205 SLRSRTHGFQHTSSRYSRERSCSRDRN 231


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 205 SLRSRTHGFQHTSSHYSRERSCSRDRN 231


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHGFQHTSSRYSRERSCSRDRN 242


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  SARSRSGRSEDTAPSPSRRRACSPGRH 146
           S RSR+   + T+   SR R+CS  R+
Sbjct: 216 SLRSRTHDFQHTSSRYSRERSCSRDRN 242


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 453  REPTAQCHHCADRDEEDTAEHTLA 524
            RE    C+ C   ++ED   H+LA
Sbjct: 1062 RERLYDCYVCYSPNDEDFVLHSLA 1085


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,357
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 37
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)