Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_K05
(884 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 33 0.005
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 33 0.005
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.014
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 31 0.014
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 31 0.014
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.043
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.043
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.057
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.100
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.17
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.30
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.40
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 26 0.40
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 26 0.53
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 25 0.93
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 6.5
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 6.5
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 8.6
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 94 CENATSPSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 258
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 259 MNWIDKRLSWNAGEW 303
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 32.7 bits (71), Expect = 0.005
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 100 NATSPSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 267
N ++ S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 268 IDKRLSWNAGE 300
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
Score = 28.7 bits (61), Expect = 0.075
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 444 RLDISTPISMQXDNWPXDMQTCTFKFGS 527
RL I M +N+P D Q C +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 32.7 bits (71), Expect = 0.005
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +1
Query: 76 IASAAECENATSPSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 234
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 235 VRIQADLQMNWIDKRLSWNAGEWGCXTWL 321
+ L+ W D + W+ E+G T L
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTEL 95
Score = 28.3 bits (60), Expect = 0.100
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 320 WCPRERLWRPDXVLLNAAATTAGDYAL-RARVSNTGSVSW 436
+ P E +W PD VL N A G + +A + TG V W
Sbjct: 96 YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 486 WPXDMQTCTFKFGS 527
+P D QTC KFGS
Sbjct: 152 FPFDQQTCFMKFGS 165
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 31.1 bits (67), Expect = 0.014
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 326 PRERLWRPDXVLL-NAAATTAGDYALRARVSNTGSVSW 436
P + +WRPD VL NA A +A ++ TG V W
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
Score = 25.8 bits (54), Expect = 0.53
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +1
Query: 94 CENATSPSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 252
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 253 LQMNWIDKRLSWNAGEWG 306
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 486 WPXDMQTCTFKFGS 527
+P D QTC KFGS
Sbjct: 156 FPFDEQTCVMKFGS 169
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.014
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 326 PRERLWRPDXVLLNAAATTAGDYALRAR--VSNTGSVSW 436
P R+WRPD +L N A + VS+TG V W
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
Score = 25.0 bits (52), Expect = 0.93
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 175 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 303
+V L+LH ++ E + + W D L WNA E+
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 31.1 bits (67), Expect = 0.014
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 302 GAAXLGWCPRERLWRPDXVLLNAAATTAGDYAL----RARVSNTGSVSW 436
G + + P E +W PD VL N A G+Y + +A + TG VSW
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 26.2 bits (55), Expect = 0.40
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +1
Query: 121 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 279
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 280 LSWNAGEWG 306
L WN E+G
Sbjct: 95 LKWNPEEYG 103
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 486 WPXDMQTCTFKFGS 527
+P D Q+C KFGS
Sbjct: 165 FPFDEQSCIMKFGS 178
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 23.0 bits (47), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 23.0 bits (47), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 23.0 bits (47), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 23.0 bits (47), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 23.0 bits (47), Expect = 3.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLVL 143
Score = 23.4 bits (48), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLVL 211
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 211 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 486 WPXDMQTCTFKFGSRMHXXDXMDXVI 563
+P D Q C KFGS + + +D V+
Sbjct: 186 FPFDDQHCDMKFGSWTYDGNQVDLVL 211
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 335 RLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
+LW+PD ++ N+A G Y V++ GS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 29.1 bits (62), Expect = 0.057
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 326 PRERLWRPDXVLL-NAAATTAGDYALRARVSNTGSVSW 436
P + +WRPD VL NA A +A + + G V W
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 486 WPXDMQTCTFKFGS 527
+P D QTC KFGS
Sbjct: 160 FPFDEQTCVLKFGS 173
Score = 23.0 bits (47), Expect = 3.7
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 121 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 285
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 286 WNAGEWG 306
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 28.3 bits (60), Expect = 0.100
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +1
Query: 67 TCAIASAAECENATSPSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 225
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 226 ESTVRIQADLQMNWIDKRLSWNAGEWG 306
T + ++ W D +L WN ++G
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYG 90
Score = 27.1 bits (57), Expect = 0.23
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 326 PRERLWRPDXVLLNAAATTAGDYAL----RARVSNTGSVSW 436
P E +W PD VL N A G+Y + +A + +TG V W
Sbjct: 98 PSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 486 WPXDMQTCTFKFGS 527
+P D QTC KFGS
Sbjct: 152 FPFDEQTCFMKFGS 165
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 121 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 279
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 280 LSWN 291
L +N
Sbjct: 95 LRFN 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.5 bits (58), Expect = 0.17
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 326 PRERLWRPDXVLLNAA-ATTAGDYALRARVSNTGS 427
P RLW+PD ++ N+A G Y V N G+
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 25.4 bits (53), Expect = 0.70
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 73 AIASAAECENATSPSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 237
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 238 RIQADLQMNWIDKRLSWNAGEWG 306
L++ W D + WN ++G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.30
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 326 PRERLWRPDXVLLNAAATTAGDYAL----RARVSNTGSVSW 436
P + +WRPD VL N A G+Y + +A V +G V W
Sbjct: 106 PSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 468 SMQXDNWPXDMQTCTFKFGS 527
S+ + +P D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
Score = 23.0 bits (47), Expect = 3.7
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 121 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 285
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 286 WNAGEWG 306
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.40
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 172 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 306
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
Score = 25.8 bits (54), Expect = 0.53
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +2
Query: 326 PRERLWRPDXVLLNAAATTAGDYALRAR----VSNTGSVSW 436
P +++W+PD VL N A G+Y +R + + G V W
Sbjct: 104 PPDKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
Score = 25.0 bits (52), Expect = 0.93
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 486 WPXDMQTCTFKFGS 527
+P D QTC KFGS
Sbjct: 158 FPFDQQTCIMKFGS 171
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 26.2 bits (55), Expect = 0.40
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 221 SRMLACLKCRVRLTTILESGGESRSYVARSESIMRDGDV 105
+RMLA L RL+ + SGG RSES++ GD+
Sbjct: 21 ARMLALLVSLHRLS--IYSGGSDWRVAGRSESVVIPGDI 57
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 25.8 bits (54), Expect = 0.53
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +1
Query: 94 CENATSPSLMIDS---LLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQAD 252
C+N P+ ++ L YD + P S +I N+T+ L + + S + + +
Sbjct: 35 CKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSW 94
Query: 253 LQMNWIDKRLSWNAGEW 303
+ + W D LSW ++
Sbjct: 95 MTLMWTDSHLSWKPSDF 111
Score = 25.4 bits (53), Expect = 0.70
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 483 NWPXDMQTCTFKFGSRMHXXDXMD 554
+WP D C FGS +H + ++
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVN 198
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.0 bits (52), Expect = 0.93
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 444 RLDISTPISMQXDNWPXDMQTCTFKFGS 527
RL I M+ N+P D Q+C GS
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSCPLILGS 182
Score = 21.8 bits (44), Expect = 8.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 332 ERLWRPDXVLLN 367
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.2 bits (45), Expect = 6.5
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +3
Query: 438 IKRLDISTPISMQXDNWPXDMQTCTFKFGSRMH 536
+ +L + +M+ +++P D Q C+ S H
Sbjct: 123 MSKLTLVLSCAMKFESYPHDTQICSMMIESLSH 155
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.2 bits (45), Expect = 6.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 325 TPAKXCSPTPLRSNSVVCRSNSFED 251
TP + + PL + V CR+N E+
Sbjct: 26 TPRRKKNKKPLPTECVFCRNNGEEE 50
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 444 RLDISTPISMQXDNWPXDMQTCTFKFGSRMH 536
RL + ++ + +P D+Q C F S H
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTH 165
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,503
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 79
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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