Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_K02
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   257   2e-69
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   256   2e-69
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   4.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  257 bits (629), Expect = 2e-69
 Identities = 127/256 (49%), Positives = 166/256 (64%)
 Frame = +3

Query: 51  FSTPLMGLWDSIPKRGPVVIVVRSRAXPKDDPSKPVHLTAXIGYKAGMTHVVREPDRPGS 230
           F  P  G    +P++       + +A PKDD SKPVHLTA +GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 231 KINKKEIVEAVTIIXTPPMVCVGVVGYIETPHGLRALXTVWAEHMSEDCRRRFYKNWYXX 410
           K++K+EI+EAVTII TPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 411 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRXKKAXIMEIQL 590
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++      KKA +MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 591 NGGTIEDKVKWARXHLEKPIPVDSVCAQXEMIDCIXXXXXXXXXXXXXXLAHKEATPXRH 770
           NGG++ DKV+WAR H EK + + S   Q EMID I                 K   P + 
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKT 242

Query: 771 TRXLRKVACIGXXHPS 818
            R LRKVACIG  HP+
Sbjct: 243 HRGLRKVACIGAWHPA 258


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  256 bits (628), Expect = 2e-69
 Identities = 126/256 (49%), Positives = 166/256 (64%)
 Frame = +3

Query: 51  FSTPLMGLWDSIPKRGPVVIVVRSRAXPKDDPSKPVHLTAXIGYKAGMTHVVREPDRPGS 230
           F  P  G    +P++       + +A PKDD SKPVHLTA +GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 231 KINKKEIVEAVTIIXTPPMVCVGVVGYIETPHGLRALXTVWAEHMSEDCRRRFYKNWYXX 410
           K++K+EI+EAVT+I TPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 411 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRXKKAXIMEIQL 590
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++      KKA +MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 591 NGGTIEDKVKWARXHLEKPIPVDSVCAQXEMIDCIXXXXXXXXXXXXXXLAHKEATPXRH 770
           NGG++ DKV+WAR H EK + + S   Q EMID I                 K   P + 
Sbjct: 184 NGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKT 242

Query: 771 TRXLRKVACIGXXHPS 818
            R LRKVACIG  HP+
Sbjct: 243 HRGLRKVACIGAWHPA 258


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 310 TLRPLMDYALCXLSGRSICLKTVDVASTKTGTNARRRLXLKPVRNGRMSLD 462
           TL    DYA+   S +S+ LK   V+   T T  RRR      RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,433
Number of Sequences: 5004
Number of extensions: 59936
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)