Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_J07
(853 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 34 0.75
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 34 0.75
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 34 0.75
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 34 0.75
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 34 0.75
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 34 0.75
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 34 0.75
AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic acet... 33 1.00
AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic acet... 33 1.00
AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine... 33 1.00
AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine... 33 1.00
Y16282-1|CAA76155.1| 494|Homo sapiens nicotinic acetylcholine r... 33 1.3
U62435-1|AAB40113.1| 494|Homo sapiens nicotinic acetylcholine r... 33 1.3
BC014456-1|AAH14456.1| 494|Homo sapiens cholinergic receptor, n... 33 1.3
AB079251-1|BAC06855.1| 494|Homo sapiens Nicotinic acetylcholine... 33 1.3
Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine r... 33 1.7
X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine re... 33 1.7
X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine r... 33 1.7
U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine r... 33 1.7
L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine r... 33 1.7
DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor, n... 33 1.7
BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor, n... 33 1.7
BC044311-1|AAH44311.2| 399|Homo sapiens hypothetical protein LO... 33 1.7
BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein. 32 2.3
BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein. 32 2.3
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 32 2.3
AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein. 32 2.3
AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein. 32 2.3
AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein. 32 2.3
L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine recep... 31 4.0
BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid... 31 4.0
BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid... 31 4.0
BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid... 31 4.0
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 31 5.3
AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine rec... 31 5.3
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 31 7.0
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 31 7.0
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 31 7.0
M86383-1|AAC84176.1| 502|Homo sapiens nicotinic acetylcholine r... 31 7.0
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 31 7.0
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 31 7.0
Y16281-1|CAA76154.1| 529|Homo sapiens nicotinic acetylcholine r... 30 9.3
Y08418-1|CAA69695.1| 503|Homo sapiens nicotinic acetylcholine r... 30 9.3
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 30 9.3
X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4... 30 9.3
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 30 9.3
X53559-1|CAA37625.1| 474|Homo sapiens neuronal nicotinic acetyl... 30 9.3
X14830-1|CAA32939.1| 501|Homo sapiens protein ( Human mRNA for ... 30 9.3
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 30 9.3
U62432-1|AAB40110.1| 504|Homo sapiens nicotinic acetylcholine r... 30 9.3
U62431-1|AAB40109.1| 529|Homo sapiens nicotinic acetylcholine r... 30 9.3
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 30 9.3
M37981-1|AAA59942.1| 503|Homo sapiens neuronal nicotinic acetyl... 30 9.3
BT006897-1|AAP35543.1| 505|Homo sapiens cholinergic receptor, n... 30 9.3
BT006646-1|AAP35292.1| 489|Homo sapiens cholinergic receptor, n... 30 9.3
BC098443-1|AAH98443.1| 504|Homo sapiens cholinergic receptor, n... 30 9.3
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 30 9.3
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 30 9.3
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 30 9.3
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 30 9.3
BC011371-1|AAH11371.1| 501|Homo sapiens cholinergic receptor, n... 30 9.3
BC006114-1|AAH06114.1| 489|Homo sapiens CHRNA3 protein protein. 30 9.3
BC002996-1|AAH02996.1| 505|Homo sapiens cholinergic receptor, n... 30 9.3
BC001642-1|AAH01642.1| 505|Homo sapiens cholinergic receptor, n... 30 9.3
BC000513-1|AAH00513.1| 505|Homo sapiens cholinergic receptor, n... 30 9.3
AJ007783-1|CAA07682.1| 504|Homo sapiens nicotinic acetylcholine... 30 9.3
AF385584-1|AAK68110.1| 489|Homo sapiens nicotinic cholinergic r... 30 9.3
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 30 9.3
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 30 9.3
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 70 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 108
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 33.9 bits (74), Expect = 0.75
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE LW PD+VL NA G + V +NG+V W
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTVVW 143
>AJ295237-1|CAC16144.1| 450|Homo sapiens neuronal nicotinic
acetylcholine receptor subunit4 protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.00
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 425
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>AJ278118-1|CAC20435.1| 450|Homo sapiens neuronal nicotinic
acetylcholine alpha10 subunit protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.00
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 425
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>AF327367-1|AAK14333.1| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.00
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 425
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>AF199235-1|AAG00795.2| 450|Homo sapiens nicotinic acetylcholine
receptor subunit alpha 10 protein.
Length = 450
Score = 33.5 bits (73), Expect = 1.00
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWD 425
+ S +WRPD+VL N A A G + + ++G+V WD
Sbjct: 106 IPSSLVWRPDIVLYNKADAQPPGSASTNVVLRHDGAVRWD 145
>Y16282-1|CAA76155.1| 494|Homo sapiens nicotinic acetylcholine
receptor alpha6 subunit precursor protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>U62435-1|AAB40113.1| 494|Homo sapiens nicotinic acetylcholine
receptor alpha6 subunit precursor protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>BC014456-1|AAH14456.1| 494|Homo sapiens cholinergic receptor,
nicotinic, alpha 6 protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>AB079251-1|BAC06855.1| 494|Homo sapiens Nicotinic acetylcholine
receptor alpha 6 protein.
Length = 494
Score = 33.1 bits (72), Expect = 1.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G T V ++++W+PD+VL N A GD+ + +A + NG ++W
Sbjct: 104 GIETLRVPADKIWKPDIVLYNNA---VGDFQVEGKTKALLKYNGMITW 148
>Y08421-1|CAA69698.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>X89741-1|CAA61893.1| 627|Homo sapiens neuronal acetylcholine
receptor alpha-4 subunit protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>X87629-1|CAA60959.1| 602|Homo sapiens nicotinic acetylcholine
receptor protein.
Length = 602
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 88 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 126
>U62433-1|AAB40111.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha4 subunit precursor protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>L35901-1|AAA64743.1| 627|Homo sapiens nicotinic acetylcholine
receptor alpha 4 subunit protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>DQ093071-1|AAY88737.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 4 protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>BC096290-1|AAH96290.1| 627|Homo sapiens cholinergic receptor,
nicotinic, alpha 4 protein.
Length = 627
Score = 32.7 bits (71), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
+ SE +WRPD+VL NA A + +A + ++G V W
Sbjct: 113 IPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRVQW 151
>BC044311-1|AAH44311.2| 399|Homo sapiens hypothetical protein
LOC339344 protein.
Length = 399
Score = 32.7 bits (71), Expect = 1.7
Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Frame = +2
Query: 590 WDVDRSXPHAGAXPXXRAKVGXXXXXXVPACLXR---DXXPPXPXXGGPPPLXXXXCSXP 760
W P G P + + P L R PP P PPPL S P
Sbjct: 182 WARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPP 241
Query: 761 XXXPAPXPXPAXAX*D 808
P P P P + D
Sbjct: 242 SPPPPPRPPPTLSASD 257
>BC150265-1|AAI50266.1| 1481|Homo sapiens CRKRS protein protein.
Length = 1481
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 689 RDXXPPXPXXGGPPPLXXXXCSXPXXXPAPXPXPAXAX*DQPPL 820
++ PP P PPP P P P P A QPPL
Sbjct: 523 KETPPPLPTIASPPPPLPTTTPPPQTPPLPPLPPIPALPQQPPL 566
>BC034003-1|AAH34003.1| 600|Homo sapiens PRR12 protein protein.
Length = 600
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 701 PPXPXXGGPPPLXXXXCSXPXXXPAPXPXPAXAX*DQPP 817
PP P PPPL S P P P P P PP
Sbjct: 113 PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPP 151
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL N T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNDGTYEVSVYTNLIVRSNGSVLW 142
>AF227198-1|AAF36401.1| 1490|Homo sapiens CrkRS protein.
Length = 1490
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 689 RDXXPPXPXXGGPPPLXXXXCSXPXXXPAPXPXPAXAX*DQPPL 820
++ PP P PPP P P P P A QPPL
Sbjct: 523 KETPPPLPTIASPPPPLPTTTPPPQTPPLPPLPPIPALPQQPPL 566
>AB033031-1|BAA86519.1| 1217|Homo sapiens KIAA1205 protein protein.
Length = 1217
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +2
Query: 701 PPXPXXGGPPPLXXXXCSXPXXXPAPXPXPAXAX*DQPP 817
PP P PPPL S P P P P P PP
Sbjct: 658 PPQPALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPP 696
>AB020711-1|BAA74927.2| 1535|Homo sapiens KIAA0904 protein protein.
Length = 1535
Score = 32.3 bits (70), Expect = 2.3
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 689 RDXXPPXPXXGGPPPLXXXXCSXPXXXPAPXPXPAXAX*DQPPL 820
++ PP P PPP P P P P A QPPL
Sbjct: 577 KETPPPLPTIASPPPPLPTTTPPPQTPPLPPLPPIPALPQQPPL 620
>L08485-1|AAA58490.1| 462|Homo sapiens GABA-benzodiazepine receptor
alpha-5-subunit protein.
Length = 462
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 430 RLDISTPISMQLDTWPNDMQTCTFKFGS 513
RL IS MQL+ +P D C KFGS
Sbjct: 166 RLTISAECPMQLEDFPMDAHACPLKFGS 193
>BT009830-1|AAP88832.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 430 RLDISTPISMQLDTWPNDMQTCTFKFGS 513
RL IS MQL+ +P D C KFGS
Sbjct: 166 RLTISAECPMQLEDFPMDAHACPLKFGS 193
>BC113422-1|AAI13423.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5 protein.
Length = 462
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 430 RLDISTPISMQLDTWPNDMQTCTFKFGS 513
RL IS MQL+ +P D C KFGS
Sbjct: 166 RLTISAECPMQLEDFPMDAHACPLKFGS 193
>BC111979-1|AAI11980.1| 462|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, alpha 5, precursor protein.
Length = 462
Score = 31.5 bits (68), Expect = 4.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 430 RLDISTPISMQLDTWPNDMQTCTFKFGS 513
RL IS MQL+ +P D C KFGS
Sbjct: 166 RLTISAECPMQLEDFPMDAHACPLKFGS 193
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 31.1 bits (67), Expect = 5.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWDKAL 434
G + V +E LW PD+ ++ + L A +S+ G + +DK +
Sbjct: 109 GINKLTVLAENLWLPDIFIVESMDVDQTPSGLTAYISSEGRIKYDKPM 156
>AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine
receptor 3 subunit C protein.
Length = 447
Score = 31.1 bits (67), Expect = 5.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWDKAL 434
G + V +E LW PD+ ++ + L A +S+ G + +DK +
Sbjct: 109 GINKLTVLAENLWLPDIFIVESMDVDQTPSGLTAYISSEGRIKYDKPM 156
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 30.7 bits (66), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>M86383-1|AAC84176.1| 502|Homo sapiens nicotinic acetylcholine
receptor alpha 3 subunit precursor protein.
Length = 502
Score = 30.7 bits (66), Expect = 7.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 282 GXWGCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G G V ++++W+PD+VL N A GD+ + +A + G V+W
Sbjct: 99 GYGGAEFMRVPAQKIWKPDIVLYNNA---VGDFQVTTKTKALLKYTGEVTW 146
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 30.7 bits (66), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 30.7 bits (66), Expect = 7.0
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
+ SE++WRPD+VL N A GD+A+ + + G ++W
Sbjct: 100 IPSEKIWRPDLVLYNNA---DGDFAIVKFTKVLLQYTGHITW 138
>Y16281-1|CAA76154.1| 529|Homo sapiens nicotinic acetylcholine
receptor alpha2 subunit precursor protein.
Length = 529
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE +W PD+VL NA A + +A + + G+V W
Sbjct: 135 VPSEMIWIPDIVLYNNADGEFAVTHMTKAHLFSTGTVHW 173
>Y08418-1|CAA69695.1| 503|Homo sapiens nicotinic acetylcholine
receptor alpha3 subunit precursor protein.
Length = 503
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 103 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 147
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 143
>X68275-1|CAA48336.1| 451|Homo sapiens nicotinic receptor beta 4
subunit protein.
Length = 451
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 52 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 96
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+ + V L L L + +++E E T+ ++ W D RL WNA G
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>X53559-1|CAA37625.1| 474|Homo sapiens neuronal nicotinic
acetylcholine receptor alpha-3merase protein.
Length = 474
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 74 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 118
>X14830-1|CAA32939.1| 501|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor beta-subunit. ).
Length = 501
Score = 30.3 bits (65), Expect = 9.3
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL--RARVSNNGSVSW 422
G + +++E +W PDVVLLN D AL VS++GSV W
Sbjct: 97 GIDSLRITAESVWLPDVVLLNNNDGNF-DVALDISVVVSSDGSVRW 141
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 143
>U62432-1|AAB40110.1| 504|Homo sapiens nicotinic acetylcholine
receptor alpha3 subunit precursor protein.
Length = 504
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 104 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 148
>U62431-1|AAB40109.1| 529|Homo sapiens nicotinic acetylcholine
receptor alpha2 subunit precursor protein.
Length = 529
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V SE +W PD+VL NA A + +A + + G+V W
Sbjct: 135 VPSEMIWIPDIVLYNNADGEFAVTHMTKAHLFSTGTVHW 173
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 143
>M37981-1|AAA59942.1| 503|Homo sapiens neuronal nicotinic
acetylcholine receptor protein.
Length = 503
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 103 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 147
>BT006897-1|AAP35543.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 3 protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 105 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 149
>BT006646-1|AAP35292.1| 489|Homo sapiens cholinergic receptor,
nicotinic, alpha polypeptide 3 protein.
Length = 489
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 105 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 149
>BC098443-1|AAH98443.1| 504|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 504
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 104 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 148
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 143
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 143
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+ + V L L L + +++E E T+ ++ W D RL WNA G
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+ + V L L L + +++E E T+ ++ W D RL WNA G
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>BC011371-1|AAH11371.1| 501|Homo sapiens cholinergic receptor,
nicotinic, beta 1 (muscle) protein.
Length = 501
Score = 30.3 bits (65), Expect = 9.3
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL--RARVSNNGSVSW 422
G + +++E +W PDVVLLN D AL VS++GSV W
Sbjct: 97 GIDSLRITAESVWLPDVVLLNNNDGNF-DVALDISVVVSSDGSVRW 141
>BC006114-1|AAH06114.1| 489|Homo sapiens CHRNA3 protein protein.
Length = 489
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 105 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 149
>BC002996-1|AAH02996.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 105 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 149
>BC001642-1|AAH01642.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 105 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 149
>BC000513-1|AAH00513.1| 505|Homo sapiens cholinergic receptor,
nicotinic, alpha 3 protein.
Length = 505
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 105 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 149
>AJ007783-1|CAA07682.1| 504|Homo sapiens nicotinic acetylcholine
receptor alpha-3 subunit protein.
Length = 504
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 104 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 148
>AF385584-1|AAK68110.1| 489|Homo sapiens nicotinic cholinergic
receptor alpha 3 protein.
Length = 489
Score = 30.3 bits (65), Expect = 9.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G V ++++W+PD+VL NA D +A + G V+W
Sbjct: 99 GAEFMRVPAQKIWKPDIVLYNNAVGDFQVDDKTKALLKYTGEVTW 143
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 30.3 bits (65), Expect = 9.3
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
G + + ++R+W PD+VL NA T V +NGSV W
Sbjct: 99 GVNILRIPAKRIWLPDIVLYNNADGTYEVSVYTNLIVRSNGSVLW 143
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 30.3 bits (65), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+ + V L L L + +++E E T+ ++ W D RL WNA G
Sbjct: 49 EESVDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,144,401
Number of Sequences: 237096
Number of extensions: 2303688
Number of successful extensions: 7569
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 5963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7259
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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