Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_J07
(853 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.010
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.013
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 30 0.024
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 30 0.031
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.054
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.054
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.054
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.072
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.072
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.072
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 28 0.13
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 28 0.13
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 28 0.13
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.29
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 27 0.29
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 8.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 8.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 8.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 8.2
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.010
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 457 MQLDTWPNDMQTCTFKFGS 513
+ ++ +P D QTC KFGS
Sbjct: 155 IDVEYFPFDEQTCVLKFGS 173
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 31.1 bits (67), Expect = 0.013
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 422
V S+ +WRPD+VL NA A +A ++ G V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 457 MQLDTWPNDMQTCTFKFGS 513
+ ++ +P D QTC KFGS
Sbjct: 151 IDVEYFPFDEQTCVMKFGS 169
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 30.3 bits (65), Expect = 0.024
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
+ RLW+PDV++ N+A G Y V NNG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 22.6 bits (46), Expect = 4.7
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R +G + LTL ++ ++ E + L++ W D + WN G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYG 93
Score = 22.2 bits (45), Expect = 6.2
Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Frame = +1
Query: 469 TW-PNDMQTCTFKFGS 513
TW P D Q C KFGS
Sbjct: 153 TWFPFDDQRCEMKFGS 168
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 29.9 bits (64), Expect = 0.031
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 457 MQLDTWPNDMQTCTFKFGS 513
+ ++ +P D Q+C KFGS
Sbjct: 160 INVEYFPFDEQSCIMKFGS 178
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.054
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +2
Query: 110 STRSSQRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV 289
S + +R + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 290 G 292
G
Sbjct: 124 G 124
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 469 TW-PNDMQTCTFKFGSXMXXSDXMDXV 546
TW P D Q C KFGS + +D V
Sbjct: 184 TWFPFDDQHCDMKFGSWTYDGNQVDLV 210
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.1 bits (62), Expect = 0.054
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 26.6 bits (56), Expect = 0.29
Identities = 13/61 (21%), Positives = 26/61 (42%)
Frame = +2
Query: 110 STRSSQRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXV 289
S + +R + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 290 G 292
G
Sbjct: 124 G 124
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 469 TW-PNDMQTCTFKFGSXMXXSDXMDXV 546
TW P D Q C KFGS + +D V
Sbjct: 184 TWFPFDDQHCDMKFGSWTYDGNQVDLV 210
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 29.1 bits (62), Expect = 0.054
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
G T V SE +W PD+VL N A G+Y + +A + + G V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 457 MQLDTWPNDMQTCTFKFGS 513
+ ++ +P D QTC KFGS
Sbjct: 147 IDVEYFPFDEQTCFMKFGS 165
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.072
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 469 TW-PNDMQTCTFKFGSXMXXSDXMDXV 546
TW P D Q C KFGS + +D V
Sbjct: 116 TWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.7 bits (61), Expect = 0.072
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 422
V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 25.4 bits (53), Expect = 0.67
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 454 SMQLDTWPNDMQTCTFKFGS 513
S+ ++ +P D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 28.7 bits (61), Expect = 0.072
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSVSW 422
G + V SE +W PD+VL N A G + +A + G V W
Sbjct: 91 GVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 472 WPNDMQTCTFKFGS 513
+P D QTC KFGS
Sbjct: 152 FPFDQQTCFMKFGS 165
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 430 RLDISTPISMQLDTWPNDMQTCTFKFGS 513
RL I M L+ +P D Q C +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
Score = 23.8 bits (49), Expect = 2.0
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 200 IRESESTVRIQADLQMNWIDKRLSWNAG 283
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 27.9 bits (59), Expect = 0.13
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +3
Query: 318 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSVSW 422
+++W+PD+VL N A G+Y +R + + NG V W
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
Score = 25.0 bits (52), Expect = 0.88
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 472 WPNDMQTCTFKFGSXMXXSD 531
+P D QTC KFGS D
Sbjct: 158 FPFDQQTCIMKFGSWTFNGD 177
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 158 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNNGSVSW 422
V R+WRPD +L N A + VS+ G V W
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 143 PPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNA 280
P + ++ L ++H N+ E TV L++ W L+W +
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 457 MQLDTWPNDMQTCTFKFGSXMXXSDXMDXV 546
M + +P D Q C KFGS + +D V
Sbjct: 113 MDVAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 472 WPNDMQTCTFKFGSXMXXSDXMDXV 546
+P D Q C KFGS + +D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.2 bits (50), Expect = 1.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 469 TW-PNDMQTCTFKFGSXMXXSDXMDXV 546
TW P D Q C KFGS + +D V
Sbjct: 116 TWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.6 bits (46), Expect = 4.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 472 WPNDMQTCTFKFGSXMXXSDXMDXV 546
+P D Q C KFGS + +D V
Sbjct: 118 FPFDDQHCDMKFGSWTYDGNQVDLV 142
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.29
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 309 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 413
++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +2
Query: 125 QRTIGTPPPDSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 292
+R + ++ +TL + ++ E + A L++ W+D L WN G
Sbjct: 2 ERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 457 MQLDTWPNDMQTCTFKFGSXMXXSDXMDXV 546
M + +P D Q C KFGS + +D V
Sbjct: 113 MDIAWFPFDDQHCDMKFGSWTYDGNQVDLV 142
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 26.6 bits (56), Expect = 0.29
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 128 RTIGTPPPDSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN 277
R G D +V + L +R A I + + +Q + W+D+RL +N
Sbjct: 48 RPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFN 98
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.2 bits (50), Expect = 1.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = +1
Query: 469 TWPNDMQTCTFKFGSXMXXSDXMDXVXDXR 558
+WP D C FGS + + ++ D +
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKK 204
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 318 ERLWRPDVVLLN 353
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,443
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 61
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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