Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_J01
(848 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 50 4e-08
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 50 4e-08
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 5e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 40 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 39 7e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 39 7e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 38 9e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 37 2e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 37 2e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 4e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 29 0.054
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 25 0.88
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 6.2
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 49.6 bits (113), Expect = 4e-08
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Frame = +1
Query: 76 CGRMRKRNITVPHDRLAPRQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQM 255
CGR KR + +R + + ++ +TL + ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKL 109
Query: 256 NWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTAGDYXLRXRVSNNGS 420
W+D L WN E+G L ++ LW+PD+++ N+A G Y V++NGS
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 49.6 bits (113), Expect = 4e-08
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Frame = +1
Query: 76 CGRMRKRNITVPHDRLAPRQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQM 255
CGR KR + +R + + ++ +TL + ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKL 109
Query: 256 NWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTAGDYXLRXRVSNNGS 420
W+D L WN E+G L ++ LW+PD+++ N+A G Y V++NGS
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 205 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTA 378
++ E + A L++ W+D L WN E+G L ++ LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 379 GDYXLRXRVSNNGS 420
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 205 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTA 378
++ E + A L++ W+D L WN E+G L ++ LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 379 GDYXLRXRVSNNGS 420
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 205 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTA 378
++ E + A L++ W+D L WN E+G L ++ LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 379 GDYXLRXRVSNNGS 420
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 205 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTA 378
++ E + A L++ W+D L WN E+G L ++ LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 379 GDYXLRXRVSNNGS 420
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 205 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTA 378
++ E + A L++ W+D L WN E+G L ++ LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 379 GDYXLRXRVSNNGS 420
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 205 NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTA 378
++ E + A L++ W+D L WN E+G L ++ LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 379 GDYXLRXRVSNNGS 420
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 40.3 bits (90), Expect = 2e-05
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +1
Query: 79 GRMRKRNITVPHDRLAPRQRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMN 258
G KR + D +R +G+ + LTL ++ ++ E + L++
Sbjct: 21 GSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLE 79
Query: 259 WIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA-ATTAGDYXLRXRVSNNGS 420
W D + WN ++G L + LW+PDV++ N+A G Y V NNG+
Sbjct: 80 WNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.1 bits (87), Expect = 5e-05
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 LQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA 366
++ +W D +L W+ E+G L V S +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 489 DMQTCTFKFGSRMHHSXXMD 548
D QTC KFGS + +D
Sbjct: 159 DEQTCVMKFGSWTYDGFQVD 178
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 166 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWR 339
++ + L L L N++ T + ++ +W D +L W E+G L V S +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 340 PDVVLLNAA 366
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 166 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWR 339
++ + L L L N++ T + ++ +W D +L W E+G L V S +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 340 PDVVLLNAA 366
PD+VL N A
Sbjct: 113 PDIVLYNNA 121
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 489 DMQTCTFKFGSRMHHSXXMD 548
D QTC KFGS + +D
Sbjct: 163 DEQTCVLKFGSWTYDGFKVD 182
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 38.3 bits (85), Expect = 9e-05
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 169 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLW 336
+VV L L L N+++ T + L+ W D + W+ E+G T L V S +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 337 RPDVVLLNAA 366
PD+VL N A
Sbjct: 104 LPDIVLYNNA 113
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 489 DMQTCTFKFGSRMHHSXXMD 548
D QTC KFGS + +D
Sbjct: 155 DQQTCFMKFGSWTYDGIQID 174
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.9 bits (84), Expect = 1e-04
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +1
Query: 175 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVV 351
++ L ++H N+ E TV L++ W L+W + E+ + V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 352 LLNAAATTAGDYXL---RXRVSNNGSVSC 429
+++ + D + V N+G++ C
Sbjct: 122 -MHSVTSVGIDLEMPSVECIVFNSGTILC 149
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.1 bits (82), Expect = 2e-04
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 166 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWR 339
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G L + +W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 340 PDVVLLNAAATTAGDYXLRXR 402
PD+VL N A G+Y +R +
Sbjct: 111 PDIVLFNNA---DGNYEVRYK 128
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 474 TIXXXDMQTCTFKFGS 521
T D QTC KFGS
Sbjct: 156 TYFPFDQQTCIMKFGS 171
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 37.1 bits (82), Expect = 2e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 136 RTIGSLPPXSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CXT 309
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 310 WLVSSXXLWRPDVVLLNAA 366
V S +W PD+VL N A
Sbjct: 95 LHVPSEHIWLPDIVLYNNA 113
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 489 DMQTCTFKFGSRMHHSXXMD 548
D QTC KFGS + +D
Sbjct: 155 DEQTCFMKFGSWTYDGYTVD 174
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 37.1 bits (82), Expect = 2e-04
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 LQMNWIDKRLSWNAGEWGCXTWL-VSSXXLWRPDVVLLNAA 366
++ W D +L WN E+G L V S +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 169 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCXTWLVSSXXLWRPD 345
+V L+LH ++ E + + W D L WNA E+ G V +WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 346 VVLLNAA 366
+L N A
Sbjct: 92 TILYNNA 98
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 29.1 bits (62), Expect = 0.054
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +1
Query: 208 IRESESTVRILADLQMNWIDKRLSWNAGEWGCXTWLVSSXXLWRPDVVLLN 360
I E + T + + +W+D+RL++ G+ + +W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 25.0 bits (52), Expect = 0.88
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 406 SNNGSVSCHKALGH 447
+NNG + CH LGH
Sbjct: 267 NNNGDMFCHTGLGH 280
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.2 bits (45), Expect = 6.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 319 TPAKXXSPIPLRSNSVVCRSNSFED 245
TP + + PL + V CR+N E+
Sbjct: 26 TPRRKKNKKPLPTECVFCRNNGEEE 50
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,990
Number of Sequences: 438
Number of extensions: 3354
Number of successful extensions: 50
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -