Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_I24
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 704 PHHHHGH 684
           PHHHH H
Sbjct: 430 PHHHHSH 436



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -1

Query: 770 PTNXFGDPRAVDSRPDQIPXQFPHHHHGHLP 678
           P +    P A  S P  I      HHH H P
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHHPHPP 470


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 572  PCIHRVSTHAVLPQRALHVQFQALV 498
            PC+ R ST A +   A+H   + L+
Sbjct: 1105 PCVLRASTPAPVVLEAVHASRRVLI 1129


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 704 PHHHHGH 684
           PHHHH H
Sbjct: 350 PHHHHHH 356


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 227 RTVQSVAVHQDHRVSLVRDRAGRVLLTIEANVSSTEDPALTK 352
           R V+SV     ++  L++ + G    TIE   SSTE  A+ K
Sbjct: 79  RKVKSVCTLDGNK--LIQVQKGEKQTTIEREFSSTEMKAIMK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,527
Number of Sequences: 438
Number of extensions: 3164
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)