Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_I22
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.37 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.6  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   8.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   8.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   8.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   8.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   8.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   8.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   8.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 222  KAFDKVWHNGLIYKLYNMGVPDRLVLIIRD 311
            KA+ KV  N +I+++Y MG  DR + +  D
Sbjct: 1542 KAYQKVEENEIIFEIYKMG--DRFIGLTSD 1569


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 398  RPLPXYYSVCISTIYPGLRRPIWRSSPMTPP 490
            RPL  +    I + Y  L R  WR     PP
Sbjct: 1328 RPLSEHIYSSIDSDYSTLERTAWRQQQPPPP 1358


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 514 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 651
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 870


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 514 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 651
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 866


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 298 SSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYINDIPR 447
           ++Y   C+ +  +I + E++P PV         PP P   +      IPR
Sbjct: 345 NNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFPPRPMGPWISIQEQIPR 394


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 309 DYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPXTIQ 422
           D+L+N +          +P+HV  G PQ   L+  T Q
Sbjct: 87  DWLANANSPVGSPSAALQPQHVVYGNPQQQQLAAETQQ 124


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 323 VRQVVSYDEHESVWHSHVIQFVYQTVVPD 237
           ++ VV  DE  S W+   ++F Y   +PD
Sbjct: 623 IKSVVPSDE--SHWNDLAMEFYYNRSIPD 649


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 323 VRQVVSYDEHESVWHSHVIQFVYQTVVPD 237
           ++ VV  DE  S W+   ++F Y   +PD
Sbjct: 661 IKSVVPSDE--SHWNDLAMEFYYNRSIPD 687


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 428 ISTIYPGLRRPIWR 469
           + T+YPG+R P +R
Sbjct: 108 LGTLYPGMRAPSFR 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 329 VPISSRGNAFPAPSRHSRSPARLRPLPXYYSVCISTIYPGLRRPIWRSSPMTPP 490
           VP ++   A P        P    P+P    V  STI   +R  +  S PM PP
Sbjct: 773 VPQNTNSQAIPRIPILPMIPVYCVPVP---QVNDSTILSPVREKLSSSQPMQPP 823


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 358 PGPVTSQPESRKAPPSPRLL 417
           PG V   PE++  PPS  L+
Sbjct: 287 PGEVDLPPETQPTPPSATLV 306


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 428 ISTIYPGLRRPIWR 469
           + T+YPG+R P +R
Sbjct: 108 LGTLYPGMRAPSFR 121


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 700 QSRCSTSPYRGPEGKYLGVT 759
           +S   TS +RGPEG  +  T
Sbjct: 104 ESSDGTSLFRGPEGTQVSAT 123


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 555 GTVVPEVAHRH*PYEKHSGALQKGSPSEHH 644
           G +  E   RH   + H   LQ  +  +HH
Sbjct: 131 GLIKQETLQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,676
Number of Sequences: 438
Number of extensions: 7108
Number of successful extensions: 37
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)