Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_I02
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   8.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.2  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   8.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 232 RWSCLWASGHQAGCRAPGSKAPSRHYR 152
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 232 RWSCLWASGHQAGCRAPGSKAPSRHYR 152
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 232 RWSCLWASGHQAGCRAPGSKAPSRHYR 152
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 660 CRARRRQWNLRRGVDGELQFRLLAVVNGETLHQ*GSEPRAGTSTEGAEDQES 505
           C  +RR   LRRG DG      LA+ N  +       P+ G S + ++   S
Sbjct: 80  CFCKRRTNTLRRGSDGS----QLAMRNDRSPSYSMQVPQQGASIDDSDPDPS 127


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 660 CRARRRQWNLRRGVDGELQFRLLAVVNGETLHQ*GSEPRAGTSTEGAEDQES 505
           C  +RR   LRRG DG      LA+ N  +       P+ G S + ++   S
Sbjct: 528 CFCKRRTNTLRRGSDGS----QLAMRNDRSPSYSMQVPQQGASIDDSDPDPS 575


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 MARCPQTRPSGVETILSTLSSARPE 277
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,368
Number of Sequences: 438
Number of extensions: 5240
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)