Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_H23
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.40 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    26   0.53 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.6  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
 Frame = -1

Query: 597 ALCRRLGCDPVQELTETTMPSEHLREPESEASSVTIHPIHKDRANRLDGPTTSRRISQPS 418
           ALC+ LG   VQ+++ T    + + E   +   +T H      A+ +D P     +   +
Sbjct: 133 ALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVAS-MDPPEPP--VPTVT 189

Query: 417 GP*LQHGPPRLAPPRSDHTGAGTRHAPGTKVS---PPLIVSGE 298
              +      L     DH G  T    G       PP+ V GE
Sbjct: 190 SACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGE 232


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 58  RFQRLF*RTNLEALHRLHGFSGNNTMTCSSKAT*PQKTLAGATMT 192
           R ++L  +T L  LH LHG  G ++   +  +  P    A A ++
Sbjct: 124 RLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSSCGPGAAAAAALLS 168



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 64  QRLF*RTNLEALHRLHGFSGNNTMTCSS 147
           +RL   TN   LH LHG  G + ++ S+
Sbjct: 123 RRLEQLTNQTGLHGLHGLHGLHGLSSSA 150


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 380 GANLGGPCWSHGP 418
           GA  GG C  HGP
Sbjct: 427 GARFGGSCLIHGP 439


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 380 GANLGGPCWSHGP 418
           GA  GG C  HGP
Sbjct: 427 GARFGGSCLIHGP 439


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 573 HSRADGRVPPWXVATWTRQSIRSSP 647
           +  AD R PP+  A+  RQSI  SP
Sbjct: 498 YKNADVR-PPFTYASLIRQSIIESP 521


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 LLAGTPP-WVLEAEALAADYKWRADLRARGVARPSPSVVRARRGQSRRSVLESWSRR 423
           L+   PP W++E   ++ +      L  +    P+P++V  +   S+    E    R
Sbjct: 700 LVVHVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRER 756


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,429
Number of Sequences: 438
Number of extensions: 5838
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)