Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_H22
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif prote...   341   2e-93
AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens ...   341   2e-93
U39402-1|AAC99998.1|  367|Homo sapiens 199G4 protein.                  95   3e-19
AB028987-1|BAA83016.2| 1315|Homo sapiens KIAA1064 protein protein.     32   3.2  
AK097638-1|BAC05128.1|  141|Homo sapiens protein ( Homo sapiens ...    31   7.5  

>BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif protein
           22 protein.
          Length = 420

 Score =  341 bits (839), Expect = 2e-93
 Identities = 145/185 (78%), Positives = 164/185 (88%), Gaps = 1/185 (0%)
 Frame = +1

Query: 160 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 339
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG 60

Query: 340 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQN 519
            RMRFKKTE+CQTCSKLKNVCQTCLLDLEYGLPIQVRDA L  +DD+P+++VNKEYY QN
Sbjct: 61  VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN 120

Query: 520 LESQLSNSDPTQPTNSL-KSKGSSDLLVRLARTAPYYKRNRPHVCSFWVXGECXRXEXCP 696
           +E ++SNSD T+P   L K+  +SD+L++LART PYYKRNRPH+CSFWV GEC R E CP
Sbjct: 121 MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP 180

Query: 697 YRHXK 711
           YRH K
Sbjct: 181 YRHEK 185


>AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10290 fis, clone MAMMA1002385, weakly similar to
           RIBONUCLEOPROTEIN RB97D. ).
          Length = 420

 Score =  341 bits (839), Expect = 2e-93
 Identities = 145/185 (78%), Positives = 164/185 (88%), Gaps = 1/185 (0%)
 Frame = +1

Query: 160 MATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKECKICSRPFTVFRWCPG 339
           MATS  +NTYNRQNWEDADFPILCQTCLG+NPYIRMTKEKYGKECKIC+RPFTVFRWCPG
Sbjct: 1   MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG 60

Query: 340 ARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQN 519
            RMRFKKTE+CQTCSKLKNVCQTCLLDLEYGLPIQVRDA L  +DD+P+++VNKEYY QN
Sbjct: 61  VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMPKSDVNKEYYTQN 120

Query: 520 LESQLSNSDPTQPTNSL-KSKGSSDLLVRLARTAPYYKRNRPHVCSFWVXGECXRXEXCP 696
           +E ++SNSD T+P   L K+  +SD+L++LART PYYKRNRPH+CSFWV GEC R E CP
Sbjct: 121 MEREISNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP 180

Query: 697 YRHXK 711
           YRH K
Sbjct: 181 YRHEK 185


>U39402-1|AAC99998.1|  367|Homo sapiens 199G4 protein.
          Length = 367

 Score = 95.1 bits (226), Expect = 3e-19
 Identities = 40/60 (66%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
 Frame = +1

Query: 535 SNSDPTQPTNSL-KSKGSSDLLVRLARTAPYYKRNRPHVCSFWVXGECXRXEXCPYRHXK 711
           SNSD T+P   L K+  +SD+L++LART PYYKRNRPH+CSFWV GEC R E CPYRH K
Sbjct: 73  SNSDGTRPVGMLGKATSTSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEK 132


>AB028987-1|BAA83016.2| 1315|Homo sapiens KIAA1064 protein protein.
          Length = 1315

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 646 VCSFWVXGECXRXEXCPYRH 705
           +C F++ G C R E CPY H
Sbjct: 436 LCKFYITGFCARAENCPYMH 455


>AK097638-1|BAC05128.1|  141|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40319 fis, clone TESTI2030754. ).
          Length = 141

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 154 HAMATSKSTNTYNRQNWEDADF--PILCQTCLGDNPYIRMTKEKY-GKECKICSRPFTVF 324
           H    S ST+   R+ WEDADF  P+L Q C   NP +   K  +  KEC+    PF   
Sbjct: 62  HGNEVSGSTS---REVWEDADFICPVLKQ-C--TNPKLNENKNIHQAKECE--KSPFLSL 113

Query: 325 ----RWCPGARMR--FKKTEICQTCSK 387
               +W PG   R     T +C  CS+
Sbjct: 114 SPHQQWKPGLPRRNDALPTSLCLCCSE 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,672,341
Number of Sequences: 237096
Number of extensions: 2342830
Number of successful extensions: 3917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3915
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)