Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_H22
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                24   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   8.7  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = +1

Query: 220 PILCQTCLGD-NPYIRMTKEKYG---KECKICS----RPFTVFRWCPGARMRFKKTEICQ 375
           PI    C G  + Y++++  K     + C  C     R  +V  +CP A+   KK     
Sbjct: 47  PIPSYACRGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVSLFCPRAKPGEKKFRKVI 106

Query: 376 TCSKLKNVCQTCLLDLEYGL 435
           T + L+ +C+ C    EY +
Sbjct: 107 TKAPLECMCRPCTSVEEYAI 126


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 136 NNIKKGHAMATSKSTNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEKYGKE 291
           NNI+  + ++   + +T NRQ      FPI C T LG   +  + K  Y  E
Sbjct: 39  NNIETKNQLSPF-NIDTPNRQKILKDGFPIKCGTFLGSGGFGIVYKALYKGE 89


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 514 QNLESQLSNSDPTQPTNS 567
           +NL S LS SD T+P  S
Sbjct: 540 ENLSSGLSISDSTKPETS 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,187
Number of Sequences: 438
Number of extensions: 4721
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)