Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_H19
(818 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 45 7e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 45 7e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 5e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 42 7e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 41 1e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 41 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 39 6e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 38 8e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.017
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 7.8
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 7.8
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 7.8
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 7.8
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 7.8
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 7.8
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 7.8
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 7.8
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 7.8
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 7.8
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 7.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.8
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 45.2 bits (102), Expect = 7e-07
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 45.2 bits (102), Expect = 7e-07
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.7 bits (96), Expect = 4e-06
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W+D L WN E+ G ++ +LW+PD+++ N+A G Y V+++GS
Sbjct: 39 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 42.7 bits (96), Expect = 4e-06
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSXRLWRPDVVLL-NAAATTAGDYALRARVSNNGS 446
++ +W D +L W+ E+G L V S +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 447 VSW 455
V W
Sbjct: 137 VEW 139
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 42.3 bits (95), Expect = 5e-06
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSXRLWRPDVVLL-NAAATTAGDYALRARVSNNGS 446
++ +W D +L W E+G L V S +WRPD+VL NA A +A + + G
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGL 140
Query: 447 VSW 455
V W
Sbjct: 141 VEW 143
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 41.9 bits (94), Expect = 7e-06
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSXRLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 285 WIDKRLSWNAGEW-GCSTWLVSSXRLWRPDVVLLNAAATTAGDYALRAR--VSNNGSVSW 455
W D L WNA E+ G V R+WRPD +L N A + VS+ G V W
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 40.7 bits (91), Expect = 2e-05
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSXRLWRPDVVLLNAAATTAGDYAL----RARVSN 437
++ W D +L WN E+G L V S +W PD+VL N A G+Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKY 142
Query: 438 NGSVSW 455
G VSW
Sbjct: 143 TGDVSW 148
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSXRLWRPDVVLLNAAATTAGDYAL----RARVSN 437
++ +W D +L W E+G L V S +WRPD+VL N A G+Y + +A V
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYY 137
Query: 438 NGSVSW 455
+G V W
Sbjct: 138 SGLVVW 143
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 38.7 bits (86), Expect = 6e-05
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSXRLWRPDVVLLNAAATTAGDYAL-RARVSNNGS 446
L+ W D + W+ E+G T L V S +W PD+VL N A G + +A + G
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGK 132
Query: 447 VSW 455
V W
Sbjct: 133 VLW 135
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 38.3 bits (85), Expect = 8e-05
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG-CSTWLVSSXRLWRPDVVLLNAAATTAGDYAL----RARVSN 437
++ W D +L WN ++G T V S +W PD+VL N A G+Y + +A + +
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHH 129
Query: 438 NGSVSW 455
G V W
Sbjct: 130 TGKVVW 135
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 36.7 bits (81), Expect = 3e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +3
Query: 273 LQMNWIDKRLSWNAGEWG-CSTWLVSSXRLWRPDVVLLNAAATTAGDYALRAR----VSN 437
L+ W D +L W+ ++G + ++W+PD+VL N A G+Y +R + +
Sbjct: 79 LRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNA---DGNYEVRYKSNVLIYP 135
Query: 438 NGSVSW 455
NG V W
Sbjct: 136 NGDVLW 141
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.7 bits (66), Expect = 0.017
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 276 QMNWIDKRLSWNAGEWGCSTWLVSSXRLWRPDVVLLN 386
+ +W+D+RL++ G+ + + R+W+PD N
Sbjct: 58 RQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 22.2 bits (45), Expect = 5.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 463 RLDISTPISMQLDNWXNDMQTCTFQ 537
RL I M L+N+ D Q C Q
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQ 147
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 21.8 bits (44), Expect = 7.8
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3
Query: 360 TSXPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSAAV--DSDSRMLACLKCRVRLTTILE 187
T TP + + PL + V CR+N E+ + D+D R ++C R I
Sbjct: 21 TMPETTPRRKKNKKPLPTECVFCRNNGEEEAYYRKHLLKDADGR-VSCPVLRAYTCPICG 79
Query: 186 SGGD 175
+ GD
Sbjct: 80 ACGD 83
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLGSRSRSFQRTSSCHSRYEDSR 238
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 7.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 336 KCCSPIPLRSNSVVCRSNSFEDLPVSAAVDSDSR 235
K C + SNS+ RS SF+ + DSR
Sbjct: 205 KTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSR 238
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 414 ALRARVSNNGSVSWNKAL 467
ALR N G ++W K +
Sbjct: 240 ALRCLAHNGGEIAWTKVI 257
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 414 ALRARVSNNGSVSWNKAL 467
ALR N G ++W K +
Sbjct: 240 ALRCLAHNGGEIAWTKVI 257
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 414 ALRARVSNNGSVSWNKAL 467
ALR N G ++W K +
Sbjct: 240 ALRCLAHNGGEIAWTKVI 257
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 338 PSAAAPFPCVPTQS 297
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,457
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 60
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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