Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_H01
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.85 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   4.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   6.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   6.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 294 NAPEPTRYSRLHSITIASRQPTSTTICSSF 205
           N+P PT  S  HS + AS  P + T  S +
Sbjct: 60  NSPSPTGSSPQHSGSSASTSPAARTTSSMY 89


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 271 IPCGLRRIHLLQPDETRL 324
           I C L + H++Q DE +L
Sbjct: 79  ITCALEKSHIIQNDEIQL 96


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 53  YRVLLAAINDLVPN 94
           +R+L+A +NDL+ N
Sbjct: 397 FRILIANVNDLIKN 410


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 611 QPAIVGTTNQMKPLYCQDAGEMKVSXPTCH 700
           QP++  TT   K  YC     +K    T H
Sbjct: 78  QPSVASTTGFSKECYCCRESYLKERHITLH 107


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 611 QPAIVGTTNQMKPLYCQDAGEMKVSXPTCH 700
           QP++  TT   K  YC     +K    T H
Sbjct: 78  QPSVASTTGFSKECYCCRESYLKERHITLH 107


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 555 CACDT*ICLEPYRY 596
           C C    CL+PY Y
Sbjct: 315 CTCKAVACLDPYVY 328


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 3   LAFNTLFSASIVVVDKPI 56
           +AF+ L+S S+V +DK +
Sbjct: 298 MAFSKLYSVSVVSLDKSL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,661
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)