Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_G19
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   4.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.5  

>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 260 AVAPNGSCFLPVSSSCWTFRCFPL 189
           A+APN +C L V   C  F C PL
Sbjct: 185 ALAPNIACLLIVRFFCGCFGCTPL 208


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 174 STVAPPSETATKHQYHFTMTSHIRISKNM 88
           S V  PS+T +  +YH   T+ I+I +++
Sbjct: 324 SIVVAPSQTLSDEEYHMLRTAAIKIIRHL 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,387
Number of Sequences: 5004
Number of extensions: 35591
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)