Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_G19
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z77670-4|CAB01249.2|  439|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF325178-1|AAG49583.1|  439|Caenorhabditis elegans CEH-32 protein.     28   6.9  

>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 204 SLFPAQPSLVSTVAPPSETATKHQYHFT 121
           +++P   +   T APP  T   +QYH+T
Sbjct: 133 NVYPLPVTTTETQAPPHHTTKPYQYHYT 160


>Z77670-4|CAB01249.2|  439|Caenorhabditis elegans Hypothetical
           protein W05E10.3 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 204 SLFPAQPSLVSTVAPPSETATKH 136
           SLFPA PS++ ++A PS   T +
Sbjct: 45  SLFPAMPSVIPSLAAPSSPTTSN 67


>AF325178-1|AAG49583.1|  439|Caenorhabditis elegans CEH-32 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 204 SLFPAQPSLVSTVAPPSETATKH 136
           SLFPA PS++ ++A PS   T +
Sbjct: 45  SLFPAMPSVIPSLAAPSSPTTSN 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,049
Number of Sequences: 27780
Number of extensions: 220703
Number of successful extensions: 518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)