Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_G13
(902 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 33 0.004
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 32 0.006
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 31 0.014
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 31 0.014
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 30 0.033
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.044
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.044
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.077
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.13
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 27 0.18
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 24 2.2
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 6.7
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 33.1 bits (72), Expect = 0.004
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 327 GCSTWLVSSERLWRPDVVLLNAAATTDGDYAL----RARVSXXGSVSW 458
G V SE +W PD+VL N A DG+Y + +A + G VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 32.3 bits (70), Expect = 0.006
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLL-NAAATTDGDYALRARVSXXGSVSW 458
V S+ +WRPD+VL NA + A +A ++ G V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.011
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAAATTDGDYAL----RARVSXXGSVSW 458
V S+ +WRPD+VL N A DG+Y + +A V G V W
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.011
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLL-NAAATTDGDYALRARVSXXGSVSW 458
V S+ +WRPD+VL NA + A +A + G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 31.1 bits (67), Expect = 0.014
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 327 GCSTWLVSSERLWRPDVVLLNAAATTDGDYAL----RARVSXXGSVSW 458
G T V SE +W PD+VL N A DG+Y + +A + G V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 31.1 bits (67), Expect = 0.014
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 321 EWGCSTWL-VSSERLWRPDVVLLNAAATTDGDYAL----RARVSXXGSVSW 458
E+G T L V SE +W PD+VL N A DG+Y + +A + G V W
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNA---DGEYGVTTMTKAILHYTGKVLW 135
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 29.9 bits (64), Expect = 0.033
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +3
Query: 354 ERLWRPDVVLLNAAATTDGDYALRAR----VSXXGSVSWI 461
+++W+PD+VL N A DG+Y +R + + G V W+
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.044
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
++ +LW+PD+++ N+A DG Y V+ GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 233 NIRESESTVRILADLQMNWIDKRLSWNAGXMG 328
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 28.7 bits (61), Expect = 0.077
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAA-ATTDGDYALRARVSXXGSVSWI 461
+ RLW+PDV++ N+A DG Y V G+ ++
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 27.9 bits (59), Expect = 0.13
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +3
Query: 354 ERLWRPDVVLLNAAATTDGDYAL---RARVSXXGSVSWITRLDISTPIXMQXRQF 509
ER+WRPD N + + R+S G + + RL I M+ R F
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNF 169
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.18
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 345 VSSERLWRPDVVLLNAAATTDGDYALRAR--VSXXGSVSWIT 464
V R+WRPD +L N A + VS G V W++
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLS 123
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 23.8 bits (49), Expect = 2.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 221 LRHANIRESESTVRILADLQMNWIDKRLSWNA 316
++H N+ E TV L++ W L+W +
Sbjct: 68 IQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 22.2 bits (45), Expect = 6.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 236 IRESESTVRILADLQMNWIDKRLSWNAG 319
I E + T + + +W+D+RL++ G
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGG 71
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,955
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 37
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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