Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_G09
(851 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 32 0.006
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.013
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.041
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.041
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.041
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.041
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.041
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.041
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.041
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.041
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.041
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 29 0.054
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 29 0.054
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 28 0.095
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.095
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 28 0.13
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 27 0.17
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 27 0.22
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.29
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 26 0.38
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 1.2
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 3.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.7
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 22 8.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 22 8.2
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRGSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDR P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW 322
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
Score = 25.4 bits (53), Expect = 0.67
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 505 WPNDMQTCTFKXGSXMHXSDEM 570
WP D+ CT S H S+E+
Sbjct: 166 WPYDILNCTIHIASWSHGSNEI 187
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRGSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGE 319
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
Score = 27.5 bits (58), Expect = 0.17
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 463 RLDISTPISMQLDNWPNDMQTCTFKXGS 546
RL I M L+N+P D Q C + GS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 32.3 bits (70), Expect = 0.006
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRGSPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRIQADLQMNWIDKRLSWNAGEWGCSTWL 340
+ L+ W D + W+ E+G T L
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTEL 95
Score = 26.2 bits (55), Expect = 0.38
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 339 WCPRERLWRPDVALLNAAATTAGDYAL-RARVSNNGSVSW 455
+ P E +W PD+ L N A G + +A + G V W
Sbjct: 96 YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.013
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 345 PRERLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
P RLW+PDV + N+A G Y V NNG+
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 24.6 bits (51), Expect = 1.2
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYDRGSPP----DSKIVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RIQADLQMNWIDKRLSWNAGEWG 325
L++ W D + WN ++G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 24.6 bits (51), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V+++GS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 26.6 bits (56), Expect = 0.29
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V++NGS
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 27.1 bits (57), Expect = 0.22
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V++NGS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.5 bits (63), Expect = 0.041
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
++ E + A L++ W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 27.1 bits (57), Expect = 0.22
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 354 RLWRPDVALLNAA-ATTAGDYALRARVSNNGS 446
+LW+PD+ + N+A G Y V++NGS
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 29.5 bits (63), Expect = 0.041
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 345 PRERLWRPDVALL-NAAATTAGDYALRARVSNNGSVSW 455
P + +WRPD+ L NA A +A + + G V W
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 23.0 bits (47), Expect = 3.6
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRGSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWG 325
W E+G
Sbjct: 92 WEPKEYG 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 29.1 bits (62), Expect = 0.054
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 345 PRERLWRPDVALL-NAAATTAGDYALRARVSNNGSVSW 455
P + +WRPD+ L NA A +A ++ G V W
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
Score = 25.8 bits (54), Expect = 0.51
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRGSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGEWG 325
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 29.1 bits (62), Expect = 0.054
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Frame = +3
Query: 321 GAAALGWCPRERLWRPDVALLNAAATTAGDYAL----RARVSNNGSVSW 455
G + + P E +W PD+ L N A G+Y + +A + G VSW
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
Score = 26.2 bits (55), Expect = 0.38
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = +2
Query: 140 MIDSLLATYDRGSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 298
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 299 LSWNAGEWG 325
L WN E+G
Sbjct: 95 LKWNPEEYG 103
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 28.3 bits (60), Expect = 0.095
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 345 PRERLWRPDVALLNAAATTAGDYALRAR----VSNNGSVSW 455
P +++W+PD+ L N A G+Y +R + + NG V W
Sbjct: 104 PPDKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLW 141
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG 325
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 28.3 bits (60), Expect = 0.095
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRGSPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRIQADLQMNWIDKRLSWNAGEWG 325
T + ++ W D +L WN ++G
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYG 90
Score = 25.0 bits (52), Expect = 0.88
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 345 PRERLWRPDVALLNAAATTAGDYAL----RARVSNNGSVSW 455
P E +W PD+ L N A G+Y + +A + + G V W
Sbjct: 98 PSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 140 MIDSLLATYDRGSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN 310
L +N
Sbjct: 95 LRFN 98
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +3
Query: 345 PRERLWRPDVALLNAAATTAGDYALRAR--VSNNGSVSW 455
P R+WRPD L N A + VS+ G V W
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVW 121
Score = 26.2 bits (55), Expect = 0.38
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Frame = +2
Query: 152 LLATYDRGSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
LL YD G P + V L L H ++ E + + W D L WNA
Sbjct: 13 LLDGYDAGVRPAENSSQPLAVVFGLSLHHIIDVDEKNQILTTNCWVTQIWTDHHLKWNAS 72
Query: 317 EW 322
E+
Sbjct: 73 EF 74
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 27.5 bits (58), Expect = 0.17
Identities = 9/41 (21%), Positives = 23/41 (56%)
Frame = +1
Query: 457 IKRLDISTPISMQLDNWPNDMQTCTFKXGSXMHXSDEMDFV 579
+ +L + +M+ +++P+D Q C+ S H + ++ F+
Sbjct: 123 MSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 27.1 bits (57), Expect = 0.22
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 463 RLDISTPISMQLDNWPNDMQTCTFKXGSXMHXSDEMDF 576
+L + +M +P+D Q C + S H +DEM F
Sbjct: 156 KLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIF 193
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.29
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 345 PRERLWRPDVALLNAAATTAGDYAL----RARVSNNGSVSW 455
P + +WRPD+ L N A G+Y + +A V +G V W
Sbjct: 106 PSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
Score = 26.2 bits (55), Expect = 0.38
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 487 SMQLDNWPNDMQTCTFKXGSXMHXSDEMD 573
S+ ++ +P D+QTC K GS + ++D
Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
Score = 23.0 bits (47), Expect = 3.6
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +2
Query: 140 MIDSLLATYDRGSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWG 325
W E+G
Sbjct: 92 WEPKEYG 98
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.2 bits (55), Expect = 0.38
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 463 RLDISTPISMQLDNWPNDMQTCTFKXGS 546
RL I M+L N+P D Q+C GS
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSCPLILGS 182
Score = 21.8 bits (44), Expect = 8.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 351 ERLWRPDVALLN 386
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.6 bits (51), Expect = 1.2
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRGSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 283
++ T+L + L YD P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 284 WIDKRLSWNAGEW 322
W D LSW ++
Sbjct: 99 WTDSHLSWKPSDF 111
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 737 RAXAGXGLPXKTLWXIAH 684
+A A G+P TLW AH
Sbjct: 432 KASATFGIPSTTLWQRAH 449
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 337 PSAAAPLPCVPTQS 296
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.8 bits (44), Expect = 8.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 398 GCSRV*QCHVRPPQAFARTPAKCCSPTPLRSNSVVCRSNSFEDLPV 261
GC ++ H+R AFA PA + + +V C D PV
Sbjct: 500 GCYQLAINHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPV 545
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.8 bits (44), Expect = 8.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -1
Query: 398 GCSRV*QCHVRPPQAFARTPAKCCSPTPLRSNSVVCRSNSFEDLPV 261
GC ++ H+R AFA PA + + +V C D PV
Sbjct: 590 GCYQLAINHIRWNSAFAIAPAVISCLGIVATMAVACLLFHHRDTPV 635
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,573
Number of Sequences: 438
Number of extensions: 4115
Number of successful extensions: 66
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -