Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_G08
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   6.0  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    22   6.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.0  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 15  ARFLISFAVNVPRNKN--SPSK*EKCPNFFVRQCFPSVSPGLSRPLY 149
           A  +++F V V  N N   P++    P    R+  P   PG +RP+Y
Sbjct: 6   AILVVTFVVAVFGNTNLDPPTR----PTRLRREAKPEAEPGNNRPVY 48


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 15  ARFLISFAVNVPRNKN--SPSK*EKCPNFFVRQCFPSVSPGLSRPLY 149
           A  +++F V V  N N   P++    P    R+  P   PG +RP+Y
Sbjct: 7   AILVVTFVVAVFGNTNLDPPTR----PTRLRREAEPEAEPGNNRPVY 49


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 15  ARFLISFAVNVPRNKN--SPSK*EKCPNFFVRQCFPSVSPGLSRPLY 149
           A  +++F V V  N N   P++    P    R+  P   PG +RP+Y
Sbjct: 7   AILVVTFVVAVFGNTNLDPPTR----PARLRREAKPEAEPGNNRPIY 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,581
Number of Sequences: 438
Number of extensions: 4374
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)