Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_G07
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.96 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +1

Query: 763 PGPXXLDXGXPGPPPXXXVXSPXQXPPPXXXPXXLPXGXP 882
           PGP       P  P      +P Q PPP   P   P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 22  LVVDERVLIFETISCTSKLRRCVCVVHCDQK 114
           L+ +ER+ I ++I+C  +      +VH D K
Sbjct: 152 LIKNERICILKSITCALQFCHNAGIVHADVK 182


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 165 CGMRAPGDCWSVPRWSQTVAPPPAD-YSN 248
           CGMR PGD   +   S T +  P + Y N
Sbjct: 89  CGMRWPGDATGLSNRSSTSSNDPKNQYKN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,872
Number of Sequences: 438
Number of extensions: 3520
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)