Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_G02
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   169   3e-43
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   169   4e-43
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.7  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.6  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  169 bits (412), Expect = 3e-43
 Identities = 76/140 (54%), Positives = 97/140 (69%)
 Frame = +1

Query: 376 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 555
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEV 150

Query: 556 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 735
           PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210

Query: 736 FNKDQGLTRAFRNIPGVELL 795
           FN+D G+ +AFRNIPGVE++
Sbjct: 211 FNEDTGIVKAFRNIPGVEIV 230



 Score =  118 bits (284), Expect = 1e-27
 Identities = 56/91 (61%), Positives = 69/91 (75%)
 Frame = +3

Query: 99  LSVARPLXVGVFREE*DGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 278
           ++ ARP  V ++ ++      +     FVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 371
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQ 89


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  169 bits (411), Expect = 4e-43
 Identities = 76/140 (54%), Positives = 97/140 (69%)
 Frame = +1

Query: 376 AFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPEL 555
           AFGNMCR GRMFAPTK WR+WH                          ARGH IE+IPE+
Sbjct: 91  AFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEV 150

Query: 556 PLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLII 735
           PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++
Sbjct: 151 PLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVV 210

Query: 736 FNKDQGLTRAFRNIPGVELL 795
           FN+D G+ +AFRNIPGVE++
Sbjct: 211 FNEDAGIVKAFRNIPGVEIV 230



 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/64 (81%), Positives = 58/64 (90%)
 Frame = +3

Query: 180 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 359
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 360 RSGQ 371
           RSGQ
Sbjct: 86  RSGQ 89


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 389 MLPKAXLTGPMSTTTTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGLPRVLGHRNVNII 216
           +LP A +T PM  TTT      + T++TP   T ++T ++        V+G   V+ I
Sbjct: 192 ILPMAAMTTPMEETTTTPM---EETTTTPMVET-MITPMVEAMTTPTEVVGRSMVSTI 245


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 117 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 40
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,154
Number of Sequences: 5004
Number of extensions: 66452
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)