Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_F22
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.2
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 27 4.3
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.3
SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit L2... 26 5.7
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S... 26 5.7
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 5.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 7.5
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 25 9.9
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.9
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 9.9
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 487 PTTEWDARSDVSEGDPF*RAPLRF 416
P T + RS ++EG PF + LRF
Sbjct: 404 PRTRTEGRSSITEGKPFLSSSLRF 427
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 333 AASSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSETSL 464
++SS P + P V P R +RSG L SP E+S+
Sbjct: 1027 SSSSGVPAPNLTPVNVPPTPPPRKSSASQRSGDLLASSPEESSI 1070
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 563 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSR 670
LG++ M + H + D+ +LGR+ P+LCSR
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSR 209
>SPCC1739.02c |mrpl22||mitochondrial ribosomal protein subunit
L22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 425 RCSSKGVALRNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPH 604
+ S K ++ T+ + R + + TL+ I WV K KYL + G R
Sbjct: 139 KMSDKKISKYIATALVSARENAVREAGLDESTLYVDQI-WVGKAKYLKKLITMGRGGRAI 197
Query: 605 IKTVRDRAAFIL 640
++ R R +L
Sbjct: 198 ERSPRVRVTVVL 209
>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Frame = -3
Query: 287 SARWVSGDRGISLIYKLNNXRGERGALRDSGGQLTGTRTSSL-------YSISKRTVRQE 129
SA + G +GI Y R L GGQ G R+ +L + + R ++E
Sbjct: 297 SAHKIYGPKGIGAAYVRRRPRVRLEPLISGGGQERGLRSGTLAPSQVVGFGTAARICKEE 356
Query: 128 VSYD 117
+ YD
Sbjct: 357 MKYD 360
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 366 HPGTVVPEVANRHQPHEKRS 425
HP VV +VAN + PH K S
Sbjct: 1284 HPERVVLKVANSYYPHSKAS 1303
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 244 YINDIPRSPETHLALFADDTAIYYSCRKMSLLHR 345
Y+ ++ +SP+ +L + D++ I + +S+LH+
Sbjct: 516 YLLELEKSPKNNLLISMDESVIEIVQKSLSVLHK 549
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -1
Query: 136 DKKSRMMSTSLSGTPMIDSFECSP 65
+ ++++ STS+ GTP++ C P
Sbjct: 254 ENETQITSTSVVGTPIVTDISCHP 277
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 196 PESRKAPRSPRLLFSLYINDIPRSPE 273
PES PR LF ++I+ + RS +
Sbjct: 423 PESTPGPRDTEFLFDVFIDVVKRSAD 448
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 401 TSTPRKAQRCSSKGVALRNITSSIPLRSRRANTSAVSPITLFG 529
+ST + S ++ RN +IP+ SRR + SAV+ TL+G
Sbjct: 466 SSTNHSSTNSGSPNLSRRN-NLAIPIASRRKSVSAVN--TLYG 505
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,714
Number of Sequences: 5004
Number of extensions: 73563
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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