Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_F21
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 64 2e-11
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 59 7e-10
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 47 4e-06
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.63
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 1.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 29 1.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 3.4
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 4.4
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 4.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.4
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 4.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.9
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 7.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 7.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.8
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Frame = +3
Query: 279 LPDGWDYARDFDGKLYFIDHNNRKTTWIDPRDRYTKPQTFADCIGN-----------ELP 425
LP GW+ G+ YF+DHN R TTW+DPR+ +P + +G+ LP
Sbjct: 308 LPFGWEMRYTDTGRPYFVDHNTRTTTWVDPRNPLVRPNGGSSTVGSLMQPQSLSHLGPLP 367
Query: 426 LGWEEAYDPQIGPYYINHVNQVTQLEDPRL 515
GWE Y+++H + T +DPRL
Sbjct: 368 SGWEMRLTNSARVYFVDHNTKTTTWDDPRL 397
Score = 55.2 bits (127), Expect = 1e-08
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Frame = +3
Query: 279 LPDGWDYARDFDGKLYFIDHNNRKTTWIDP-------------------RDRY----TKP 389
LP GW+ D G+ Y++DHN R TTW P ++R+ + P
Sbjct: 238 LPPGWERRADSLGRTYYVDHNTRTTTWTRPASSTNPVHNTSSDSQRLNHQNRHLPDDSNP 297
Query: 390 QTFADCIGNELPLGWEEAYDPQIGPYYINHVNQVTQLEDPR 512
GN+LP GWE Y PY+++H + T DPR
Sbjct: 298 SLMQSDSGNDLPFGWEMRYTDTGRPYFVDHNTRTTTWVDPR 338
Score = 46.4 bits (105), Expect = 5e-06
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 276 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR 371
PLP GW+ ++YF+DHN + TTW DPR
Sbjct: 365 PLPSGWEMRLTNSARVYFVDHNTKTTTWDDPR 396
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 393 TFADCIGNELPLGWEEAYDPQIGPYYINHVNQVTQLEDP 509
+F D G LP GWE D YY++H + T P
Sbjct: 230 SFEDQYGR-LPPGWERRADSLGRTYYVDHNTRTTTWTRP 267
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 59.3 bits (137), Expect = 7e-10
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = +3
Query: 267 GEMPLPDGWDYARDFDGKLYFIDHNNRKTTWIDPR-----------DRYTKPQTFADCIG 413
G LP GW+ +G+ YF+DHN R TTW+DPR + T Q +G
Sbjct: 286 GSGELPPGWEQRYTPEGRPYFVDHNTRTTTWVDPRRQQYIRSYGGPNNATIQQQPVSQLG 345
Query: 414 NELPLGWEEAYDPQIGPYYINHVNQVTQLEDPRL 515
LP GWE Y+++H + T +DPRL
Sbjct: 346 -PLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 378
Score = 44.0 bits (99), Expect = 3e-05
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 279 LPDGWDYARDFDGKLYFIDHNNRKTTWIDP 368
LP GW+ D G+ Y++DHN R TTWI P
Sbjct: 207 LPPGWERRTDNLGRTYYVDHNTRSTTWIRP 236
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 381 TKPQTFA---DCIGNELPLGWEEAYDPQIGPYYINHVNQVTQLEDPRL 515
++P+TF+ D G LP GWE D YY++H + T P L
Sbjct: 192 SEPRTFSSFEDQYGR-LPPGWERRTDNLGRTYYVDHNTRSTTWIRPNL 238
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 46.8 bits (106), Expect = 4e-06
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 276 PLPDGWDYARDFDGKLYFIDHNNRKTTWIDPRD 374
PLP GW+ D +YF+DH+ + TTW DPRD
Sbjct: 243 PLPAGWEMRLSEDYHVYFVDHSTKTTTWSDPRD 275
Score = 29.5 bits (63), Expect = 0.63
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 420 LPLGWEEAYDPQIGPYYINHVNQVTQLEDPR 512
LP GWE Y+++H + T DPR
Sbjct: 244 LPAGWEMRLSEDYHVYFVDHSTKTTTWSDPR 274
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.63
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -3
Query: 582 PREPPALCGGSPSASPPEHSAILASGLLAGSPD*RD*CSRARSEDRRPPPSQAA 421
P PP+L G+P+A P SA +A L AG P A + P P+ AA
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 1.1
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Frame = -1
Query: 356 RRFSVVMIDEIKFSVKVPCIIPSVGQGHLTVSSPWHISLIKSIQTSNEAHSRTSYTAMLN 177
+RF V+IDE +++ C IP +G + ++ H+ L ++Q+ S
Sbjct: 381 QRFDAVIIDEASQALEPQCWIPLLGMNKVILAGD-HMQLSPNVQSKRPYISMFERLVKSQ 439
Query: 176 TSLXRCDVT---RDQPMAAKGPHD---GMRRVRESEHTKRFRTSLE 57
L +C + R + +K P D + V E KR LE
Sbjct: 440 GDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLE 485
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 333 DHNNRKTTWIDPRDRYTKPQTFADCIGNELPLGWEEAYDPQIGPYYINHVNQVTQLEDPR 512
D+ K + +R+ K + D G+E+ +DP YIN+ N+V + DP
Sbjct: 490 DYYEYKRLLYNEWERFAKLVAYLDHFGDEI---LSINFDPSNAVTYINYANKVAFIRDPY 546
Query: 513 L 515
L
Sbjct: 547 L 547
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +3
Query: 384 KPQTFADCI----GNELPLGWEEAYDPQIGPYYINHVNQVTQLEDPRLEWLSVQEAMLRD 551
KP T +D + G PLG+E ++ + H + ++ L DP E + +Q LRD
Sbjct: 338 KPSTESDLMPTSFGKIKPLGFERFRICELYAELL-HCSNMSLLSDPNGEAMVMQRDHLRD 396
Query: 552 YL 557
YL
Sbjct: 397 YL 398
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 151 RGISQWRRRVPTMECGAYARANTRSGSVRHSND 53
+GI+ W+R+ EC R N+ S +H D
Sbjct: 170 KGITTWKRKCRLRECSNPTRPNSNYCSDKHGVD 202
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = -1
Query: 290 SVGQGHLTVSSPWHISLI---KSIQTSNEAHSRTSYTAMLNTSLXRCDVTRDQPMAAKGP 120
S H +SP + KS++ SN H T + N L +T+ QP+ A
Sbjct: 58 SKANNHFLCNSPLKFEIFNNEKSVKPSNGPHLFTRCSCRCNKLLSGDYITQQQPIDASAE 117
Query: 119 H 117
H
Sbjct: 118 H 118
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 420 LPLGWEEAYDPQIGPYYINHVNQVTQLEDPRLE 518
LP GW +D + G Y+ +VN+ Q P+ E
Sbjct: 10 LPSGWVAQWDAEYGTYF--YVNESAQNPQPQWE 40
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 474 NHVNQVTQLEDPRLEWLSVQEAMLRDYLHTAQEALEAKKEMYDVKKQRLCLAQDEYKHLN 653
N +Q+ + R++ LS +A+L + H +E +A+KE+ ++ Q+ +
Sbjct: 416 NEKSQIAVPSEIRVQ-LSTLDAILLQFEHLRKELTQARKEIQILRHTSQNGDQESNESSK 474
Query: 654 NALSTLAASRTXRK 695
NA++T + K
Sbjct: 475 NAITTKTTDKGNNK 488
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 225 LNGFNQ*NMPRRRNGEMPLPDGWDYARDF 311
LNG N+ NMP +NG +PL D+ ++
Sbjct: 534 LNGINESNMPMLQNG-LPLRTSGDHPSNY 561
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 510 RLEWLSVQEAMLRDYLHTAQEALEAKKEMYD-VKKQRLCLAQDEYKHLNNALSTL 671
RLE + + A L + A++A + KE ++ VK++RL Q + H++ + +
Sbjct: 1030 RLETVETRLAKLDEEFAAARKAAKNAKERFNAVKQKRLQKFQAAFSHISEQIDPI 1084
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 414 NELPLGWEEAYDPQIGPYYINHVNQVTQLEDPRLEW-LSVQEAMLRDYLHTAQ--EALEA 584
+E+ + DP I PYY + Q E+P +E L + + D T++ + L A
Sbjct: 391 SEIDISLTAYNDPVISPYYDTEEWNLEQREEPGIETVLDFSKLRINDKTMTSKRFDDLSA 450
Query: 585 KKEMYDVKKQR 617
++ D K R
Sbjct: 451 TRKTGDNTKDR 461
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 582 PREPPALCGGSPSASPPEHSAILASG 505
P PP + G P PP A+ A G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,588
Number of Sequences: 5004
Number of extensions: 64994
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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