Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_F18
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.50
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 29 0.87
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.2
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.7
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.7
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 26 6.1
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 26 6.1
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 26 6.1
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 8.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 522 YASSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 623
Y SS IS +ST N FH PT TS S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 29.1 bits (62), Expect = 0.87
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 584 IPYT--NHPRLNIHFHQSLTPY*KEFAPGL--KPPLSSEAPSAYLTPS 715
+PYT NHP+ +I FH P K+ L KP ++S+A +A + S
Sbjct: 27 LPYTARNHPQFSIWFHNDFEPV-KDLKALLKDKPQIASQAVTALVNVS 73
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.2
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 447
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 448 DVTVEGVNVLATPSSS 495
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 528 SSHPPLAISATSTRSSNPRFHTPTTPDLTSIS 623
+S PP ++S+ FHTPT P T +S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLS 151
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 372
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 340 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 533 PPSPGDLGYINPIIKSPIPYTNHP 604
PP PGD+ + NP++ P + P
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQP 241
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 653 FAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFK*MMNQK 775
F G +P +L P S+G+ G S P F+ +K
Sbjct: 192 FILGWRPSDMDNGYDPFLNPDSIGVEHGFSDPVFRKQFKEK 232
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +2
Query: 560 INPIIKSPIPYTNHPRLNIHFHQSLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGV 739
I P P+ + LN + + P + G K +E SAY P + +
Sbjct: 5 IKPSFLKPVGFIQTRNLNRLYPKQRIPKRPKIPMGSKIAEVTETTSAYYNPPASSPDVRI 64
Query: 740 SPPYFK 757
+PP F+
Sbjct: 65 TPPVFR 70
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 509 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 375
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +1
Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 456
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 457 VEGVNVLATP 486
V +TP
Sbjct: 540 YTSTPVTSTP 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,144
Number of Sequences: 5004
Number of extensions: 64621
Number of successful extensions: 250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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