Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_F07
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    28   1.4  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   4.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 219 VRVHRADTGRSSNEXDRQTTELERRGMGL 305
           +R H+   GR+  E DR+ T+L++R   L
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERAL 46


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 297 FPCVPTQSFVDPIHLKICQYPHGGL 223
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 1   Y*SCHKMSDDLYYSCYLLSPHLCYS*CGRMRKTQHHCPIMIDSL 132
           Y SC+     L++ C L   H C   C  + +T+ HCP   D L
Sbjct: 407 YYSCNNPCT-LFFDCGL---HKCSKTCHPISETRAHCPFATDVL 446


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 356 C*TRLQPPPGTTLSAPVYLITAPSPGIKRLDISTP 460
           C   L+PPP   + +  Y ++ PSP +    IS P
Sbjct: 149 CQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,745
Number of Sequences: 5004
Number of extensions: 46001
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)