Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_F06
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 30 0.52
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 30 0.52
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 28 1.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.4
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 6.4
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 26 8.5
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 8.5
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 365 ANEPSPVELRPAVRTVSSPS-HSFRRASGSSAVEPAPTSSTNAIKTMMFSRS 213
+NEP+ + + SSPS ++ AS S +V P T S + I FS S
Sbjct: 158 SNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLTPSASTINDQPFSNS 209
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 29.9 bits (64), Expect = 0.52
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 286 EALLNEWLGELTVLTAGLNSTGDGSLALRPLEIVAPRIDTYRFSMANLEETQDADLDAIL 465
E +++ + ++ L +NS GDGS AL P + R+ T++ L + L + +
Sbjct: 678 ERMISAIVPVISRLYDSMNSVGDGSQAL-PKYVALERLKTWKLLFKLLPNDEFHLLPSAI 736
Query: 466 GELCALDSEYDEEL 507
E+ +D++L
Sbjct: 737 AEVVLFSKHHDDDL 750
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Frame = +1
Query: 340 NSTGDGSLALRPLEIVAPRIDTY--RFSMANLEETQDADLDAILGELCALDSEYDEELSR 513
N TGDG + P + P D+Y F + + +++ G+ ++ ++E S
Sbjct: 337 NYTGDGDYSSSPATLTCPADDSYFTSFPLPTMPSEAKGFIESGAGQPLGFNAPSNQEFSA 396
Query: 514 VSSGFASGSKDRVPRTTEPCTVRQEKDNSDAASGITRTESRTMTPLS 654
++ S V TT + Q + + SG + S T S
Sbjct: 397 NATALVSPGPHSV-STTINTNIVQATISQSSTSGSSSGSSSASTTAS 442
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 323 TVSSPSHSFRRASGSSAVEPAPT-SSTNAIKTMMFSRSHTKDTIQGACLRKND 168
T +SPS + SGSS + AP+ +++I + S +HT+ + LR+ D
Sbjct: 278 TFASPSFNISSLSGSSNIGTAPSYEISSSIGANVSSLAHTQRLPSFSFLRRRD 330
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 3.7
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = +1
Query: 271 TADDPEALLNEWLGELTVLTAGLNSTG-------DGSLALRPLEIVAPRIDTYRFSMANL 429
+A P A+L E G TV + L S+ G+ AL P+E +A ID + N+
Sbjct: 21 SAPGPNAVLQEGGGVNTVSWSNLTSSTVTLTLYRGGNSALTPIETIASDIDNTGTYLWNI 80
Query: 430 EETQDADLDAILG 468
+A D +LG
Sbjct: 81 ATYYEAADDYLLG 93
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -1
Query: 317 SSPSHSFRRASGSSAVEPAPTSSTNAIKTMMFSRSHTKDTIQGACL 180
SSP+ + S SS+ +PTS+++ I + S S T+ + +
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSM 326
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -1
Query: 395 RGATISRGLRANEPSPVE-LRPAVRTVSSPSHSFRRASGSSAVEPAPTSSTNAIKTMMFS 219
+G R R+N+P P + +PAV T S+ S V PT T A +F
Sbjct: 18 KGGIRKRRARSNKPKPTKNAKPAVNTASALKSVISEES-KIIVSNLPTDVTEAQVKELFV 76
Query: 218 RS 213
+S
Sbjct: 77 KS 78
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 217 ALTLKIQFKEHAFEKTTSTLFWNVHK*TELSFI 119
+L L + + E+ + + W HK TE+ FI
Sbjct: 206 SLPLDLLIRTSGVERLSDFMLWQCHKNTEIKFI 238
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 271 TADDPEALLNEWLGELTVLTAGLNST 348
T + P A + WL +LT L+ NST
Sbjct: 93 TLEKPIASTHRWLSKLTALSKSTNST 118
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,805
Number of Sequences: 5004
Number of extensions: 60957
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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