Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_F06
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    29   0.058
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 29.1 bits (62), Expect = 0.058
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -2

Query: 421 PSRTDRCRCVERLFQEASELMNHRRLN*DPQ*ERSVRQATRSEELRDRQR 272
           PS+   C   +R++   + L NH+ +    Q  ++ +Q    E++R+R+R
Sbjct: 29  PSKEPICNICKRVYSSLNSLRNHKSIY-HRQHSKNEQQRKEMEQMRERER 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 317 SSPSHSFRRASGSSAVEPAPTSSTNA 240
           SSP +    A+ S++  P P SST A
Sbjct: 825 SSPRYLSAAATSSTSTSPRPASSTAA 850


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 553 PRTTEPCTVRQEKDNSDAASGITRTESRTMTPLSV 657
           PR T   +++ E DNSD +   T  E+R  + L +
Sbjct: 216 PRLTNSNSIKHESDNSDYSH--TTDENRHSSTLDI 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,501
Number of Sequences: 438
Number of extensions: 4367
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)