Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_F04
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    30   1.8  
U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    28   9.4  
AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical ...    28   9.4  

>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 CGEARFLCGNRYRDACVSSDGALKSCRYVRI 258
           C E    CG +YR+ C S+   L+S +  R+
Sbjct: 559 CSENCGSCGTQYRERCTSTTNCLRSAKQTRV 589


>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 150 QRNHQHTQHIRNKNFAVARHTQCSAEQRRDKKRTRNKRASQSRAATYT 7
           ++ H+  QHI   NF + + ++ ++  R+ K R RN + SQ R    T
Sbjct: 356 KKMHRLVQHIHQSNFVLFKRSRRTSSSRQ-KSRRRNSK-SQRRPLVLT 401


>AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical
           protein T21G5.6 protein.
          Length = 90

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 183 ESGFSAHLXERQRNHQHTQHIRNKNFAVARHTQCSAEQRRDKKRTRNKR 37
           E G         R+H H  HIR+K+    R    ++E+ R K + RNK+
Sbjct: 36  EDGLEIEKPSHARHHHHKHHIRHKH----RRRSLTSEEDRTKTQ-RNKQ 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,828
Number of Sequences: 27780
Number of extensions: 249228
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)