Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_F04
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 788  ALSRRCPPEPRL 753
            A +RRCPP PR+
Sbjct: 1696 APNRRCPPPPRM 1707


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 573 RLVSLLYVGIEVYDKVADADVPLVVIVL 490
           R V  +  GI V    ADA  PL  IVL
Sbjct: 311 RCVQAMIAGIVVISAGADAYPPLAAIVL 338


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 101 SHDTHNAVQNSDAIKSEHEINARHN 27
           +H  HN  Q   + KS+++ N +HN
Sbjct: 423 NHYNHNHNQARHSSKSDNQNNNQHN 447


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -2

Query: 240 RLQCTITRHTGI----PVTIPAQESGFSAHLXERQRNHQHTQHIRNKNFAVARHTQCSAE 73
           +LQ     H G     P + P  ES    H    Q  H   Q  ++++ A  +H Q   +
Sbjct: 142 KLQAAAVDHQGSVLDGPDSPPLVESQMH-HQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQ 200

Query: 72  QRRDKKRTRNKRASQ 28
               +++ +++ ASQ
Sbjct: 201 HMMYQQQQQSQAASQ 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,774
Number of Sequences: 438
Number of extensions: 3430
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)