Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_F01
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        97   3e-21
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        48   2e-06
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    29   0.77 
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   3.1  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.2  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   9.5  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 97.1 bits (231), Expect = 3e-21
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 4/222 (1%)
 Frame = +2

Query: 59  FWEYGGNAIASGES-VRLAPSLRSQKGAIWTKQPINFDWWEVDIMFKITGRGR-IGADGL 232
           +WEYGG+ +   ++ + L   +++Q+G I T+ P     +EV   F+I      +  DGL
Sbjct: 45  WWEYGGSTVIDRKNGIFLTQDVQNQQGWISTRLPTPSSSFEVLFQFRINSESTSLFGDGL 104

Query: 233 AFWYTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNKHNN-PYIMAVVNDGTKVFDHKSD 409
           AF+   +R    G VFG +DK+NG G+  D+++N       P ++ +  DG   +D+++D
Sbjct: 105 AFFLAAERAK-PGPVFGFTDKFNGYGIFIDTYNNHRPGTLFPRVIVMKGDGHTPYDYEND 163

Query: 410 GTTQLLSGCLR-DFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLPR 586
           G    ++ C   + R   +    K++Y  N   + F      +   +  CF    V LP 
Sbjct: 164 GKANEIASCSALNVRGNDY-NLGKLKYDKNAKKLRFEIAYQGSSS-FIKCFDLNEVELPL 221

Query: 587 GGHFGLSAATGGLADDHDVIHFLTTALYSTQQPGTQQISSDE 712
                 SA TG L++ H++   L+  +      GT +I ++E
Sbjct: 222 TTFMSFSAHTGDLSESHEIASILSRTITDIDDEGTPEIPAEE 263


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 2/192 (1%)
 Frame = +2

Query: 62  WEYGGNAIASGESVRLAP--SLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLA 235
           W++ G+       V L    S  ++ G++W+   +    W++   F +           A
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQVGWQLSTSF-VAHVSENENTFFA 97

Query: 236 FWYTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGT 415
            WYT+  G   G VFG+SDKW+GL +I    D   K    ++   +ND +      +D  
Sbjct: 98  IWYTSAVGS-EGPVFGASDKWDGL-LISQEIDQTGK---IFVRGYLNDKSFELAQFTDPD 152

Query: 416 TQLLSGCLRDFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLPRGGH 595
               + C     + P       E   N +  Y          + + CF+ ++V+LP+G +
Sbjct: 153 LPPFAKC--TIESSP-------EALNNIILKYGDQSGLELFVNDKPCFQVKDVILPQGYY 203

Query: 596 FGLSAATGGLAD 631
           FG+S+ +    D
Sbjct: 204 FGVSSQSTSAKD 215


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 128 QKGAIWTKQPINFDWWEVDIMFKI 199
           +KG+IW ++PI+ +W + D  F +
Sbjct: 206 KKGSIWIREPIDQEWHQQDKKFSV 229


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 303 PFHLSDEPNTSPV*SPRCVVYQNA 232
           PFHLS+E + + V +PR +V  +A
Sbjct: 263 PFHLSEECSNASVAAPRAIVMTSA 286


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 503 TVYFHNGMTNNEQDYELCFRAENV 574
           +V FH+G  NN +D    FR EN+
Sbjct: 165 SVMFHSGQLNNVKDICNKFRPENI 188


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 318 NMTPRPFHLSDEPNTSPV*SPRCVVYQNAKPSAPILPLPVI 196
           N  P P  L  +PN+SPV  P  +  + A  S  +LP  ++
Sbjct: 353 NSEPNP-KLDSQPNSSPVRRPSLIKVKTA--STSVLPTSIL 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,350
Number of Sequences: 5004
Number of extensions: 62230
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)