Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_E15
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 358 AVSTQTGFLSLRSWPGTRPPHRPSLFP 278
           ++  ++G +S  S PGT   H P+ FP
Sbjct: 382 SIRNRSGLVSGSSTPGTGREHDPAKFP 408


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 365 MSCSFNSNRVPLPPFLARNKATAPAFSIPSSNLSIDCDICESFASINLSR 216
           +S +  S+    P   +   AT      PS+ + +  DI +S   +NLS+
Sbjct: 830 LSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSK 879


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/19 (42%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 659 NTIA-LAEIKGYAIMQFSW 712
           NT A ++++ GYA++ +SW
Sbjct: 186 NTYAYISDLSGYALVVYSW 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,179
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)