Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_E11
(906 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.72
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.72
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.72
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.72
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.72
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.72
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.72
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.72
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.95
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 2.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 2.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 2.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 2.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 5.1
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 67 KLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 67 KLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 67 KLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 67 KLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 67 KLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 67 KLWKPDILMYNS 78
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 135 KLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.72
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 246 IRESESTVRIQADLQMNWIDXRLXWNAWXWG 338
+ E + A L++ W+D L WN +G
Sbjct: 94 VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 21.8 bits (44), Expect = 8.8
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 367 RLWRPDVVLVNA 402
+LW+PD+++ N+
Sbjct: 135 KLWKPDILMYNS 146
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.0 bits (52), Expect = 0.95
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 260 VHRANTGRSSNELD-RQXTXLERMGXGLHHXAGVLXNACGGL 382
+ R NT ++ D R +++ G HH V+ C GL
Sbjct: 355 MRRYNTPSKRSDYDSRPQYQIDKRSMGSHHGQRVMVRTCNGL 396
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 PX*RLWRPDVVLVN 399
P +WRPD+VL N
Sbjct: 102 PSDHIWRPDIVLYN 115
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.2 bits (50), Expect = 1.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 358 PX*RLWRPDVVLVNA 402
P RLW+PDV++ N+
Sbjct: 101 PPHRLWKPDVLMYNS 115
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 358 PX*RLWRPDVVLVNAGXXTXGDYALR 435
P ++W+PD+VL N G+Y +R
Sbjct: 104 PPDKVWKPDIVLFN---NADGNYEVR 126
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 PX*RLWRPDVVLVN 399
P +WRPD+VL N
Sbjct: 106 PSDHIWRPDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 PX*RLWRPDVVLVN 399
P +WRPD+VL N
Sbjct: 106 PSDHIWRPDIVLYN 119
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 PX*RLWRPDVVLVN 399
P R+WRPD +L N
Sbjct: 83 PYNRVWRPDTILYN 96
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.6 bits (46), Expect = 5.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 334 GAAPLGWCPX*RLWRPDVVLVN 399
G + + P +W PD+VL N
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYN 124
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,844
Number of Sequences: 438
Number of extensions: 2552
Number of successful extensions: 31
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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