Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_D09
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    33   0.37 
09_06_0142 - 21107878-21109104                                         29   4.5  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   6.0  
05_05_0175 + 22966151-22967614                                         29   6.0  

>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 161 YDDNTDY-NIAVIYSGYDITTQTVFVSGD---DSLXITSTSCSPRLGRRFSTPFSHIQKR 328
           YDD  +  +I V +   +I +      G    + L ITST CSPR     + PFSH    
Sbjct: 352 YDDEVEVGSIDVFFEAVEIFSNLDSQEGQRDAEILSITSTECSPRAELMKTAPFSHFDME 411

Query: 329 V 331
           +
Sbjct: 412 I 412


>09_06_0142 - 21107878-21109104
          Length = 408

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 92  IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 190
           I   +   FG L C+ + GEPG Y   T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 94  DVAMEVYKMRWNGK 53
           D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 741 RKRGGRNECELIN--VGGRSYPEEHKGGVITRRNRGKALSDKEVRALLL 601
           R  GG    E++   VGG  Y  E +GG   ++ R + +SD  V A LL
Sbjct: 20  RGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGHVVAQLL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,767,402
Number of Sequences: 37544
Number of extensions: 499413
Number of successful extensions: 1367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)