Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_D09
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 309 SLTFKKEFVRN-GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFV 476
           SL   +  +R  GL CG   G A  I A +              LPD I +YL++FV
Sbjct: 289 SLNAARMLIRQEGLLCGGSSG-AALIAALKIAKDIPEEKRMVIILPDGIRNYLTKFV 344


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +1

Query: 55  FHSISSYRPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 219
           + S + + PP  H +QH+ S      H     + H   QHG           HHH
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS----QYHPHRGSSPH--HQHGNHTMGPTMGPPHHH 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 211  VVPAVNDGNIVIRVVVISAGLAGKAHAGQR 122
            VVP V    ++I  V++   L GK H   +
Sbjct: 1588 VVPVVAAILVIIVAVIVICVLRGKGHGSDK 1617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,585
Number of Sequences: 438
Number of extensions: 5006
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)