Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP03_FL5_D08
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   147   2e-36
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   147   2e-36
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   4.5  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.9  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   7.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  147 bits (357), Expect = 2e-36
 Identities = 65/122 (53%), Positives = 89/122 (72%)
 Frame = +1

Query: 277 MVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 456
           MV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST-- 141

Query: 457 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 636
           +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WAREH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 637 PI 642
            +
Sbjct: 202 TV 203



 Score =  144 bits (348), Expect = 2e-35
 Identities = 63/81 (77%), Positives = 73/81 (90%)
 Frame = +3

Query: 33  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 212
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 213 PGSKINKKEIVEAVTIIETPP 275
           PGSK++K+EI+EAVTIIETPP
Sbjct: 63  PGSKMHKREILEAVTIIETPP 83


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  147 bits (357), Expect = 2e-36
 Identities = 65/122 (53%), Positives = 89/122 (72%)
 Frame = +1

Query: 277 MVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGR 456
           MV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    
Sbjct: 84  MVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAEST-- 141

Query: 457 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 636
           +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WAREH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 637 PI 642
            +
Sbjct: 202 TV 203



 Score =  143 bits (347), Expect = 2e-35
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +3

Query: 33  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 212
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 213 PGSKINKKEIVEAVTIIETPP 275
           PGSK++K+EI+EAVT+IETPP
Sbjct: 63  PGSKMHKREILEAVTVIETPP 83


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 302 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 454
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 496 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 606
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 203 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 39
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 218 FKNQQERDRGGCHHHRDSSXWFVSVLLDTLRPLMDYAL 331
           FK++    + G HH  D    F++  L TL  L D +L
Sbjct: 94  FKDEHLAQKKGLHHFADLKEIFLNKNLSTLDGLQDASL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,211
Number of Sequences: 5004
Number of extensions: 67419
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)