Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP03_FL5_D07
(860 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.010
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.042
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.096
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.096
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.22
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.29
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.51
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.51
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.51
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.51
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.51
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.90
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.90
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.90
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 1.6
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.6
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.3
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.3
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.5 bits (68), Expect = 0.010
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 104 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 271
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 272 IDKRLXLE 295
+D+RL +
Sbjct: 62 VDRRLAFQ 69
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 29.5 bits (63), Expect = 0.042
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
+ RLW+PDV++ N A G Y V NNG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.3 bits (60), Expect = 0.096
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.3 bits (60), Expect = 0.096
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V++NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.17
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLL-NAXATTAGDYALRARVSNNGSV 435
V S+ +WRPD+VL NA A +A + + G V
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLV 141
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.1 bits (57), Expect = 0.22
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLL-NAXATTAGDYALRARVSNNGSV 435
V S+ +WRPD+VL NA A +A ++ G V
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV 137
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.29
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN 372
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 23.0 bits (47), Expect = 3.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 485 DXWPNDMQTCTXKXGSXMHN 544
+ +P D+QTC K GS ++
Sbjct: 158 EFFPYDVQTCVLKLGSWTYD 177
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.51
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.51
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.51
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.51
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.51
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 432
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.0 bits (52), Expect = 0.90
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN 372
V SE +W PD+VL N
Sbjct: 97 VPSEHIWLPDIVLYN 111
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.0 bits (52), Expect = 0.90
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN 372
V SE +W PD+VL N
Sbjct: 97 VPSEHIWLPDIVLYN 111
Score = 23.0 bits (47), Expect = 3.6
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +2
Query: 71 LML*LVRQICENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRH-ANIRESES 235
++L L +IC + D LL+ Y+R P S +VV L L L ++ +
Sbjct: 6 IILILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQ 65
Query: 236 TVRIQADLQMNWIDKR 283
+ L+ W D +
Sbjct: 66 ILTTNVWLEHEWQDHK 81
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.0 bits (52), Expect = 0.90
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN 372
V SE +W PD+VL N
Sbjct: 110 VPSENIWLPDIVLYN 124
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.2 bits (50), Expect = 1.6
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +1
Query: 337 ERLWRPDVVLLNAXATTAGDYAL---RARVSNNGSVSXIKRXDISTPISMHFR 486
ER+WRPD N + + R+S +G + R I M R
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELR 167
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 337 ERLWRPDVVLLNAXATTAGDYALR 408
+++W+PD+VL N G+Y +R
Sbjct: 106 DKVWKPDIVLFN---NADGNYEVR 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 328 VSSERLWRPDVVLLN 372
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 6.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Frame = -1
Query: 530 NRTXTCKSACRWANXLKCIEIGVLMS 453
N+T TC W C+++ ++ +
Sbjct: 241 NQTITCPIKVSWRGNYSCLKVDLIFT 266
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 6.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Frame = -1
Query: 530 NRTXTCKSACRWANXLKCIEIGVLMS 453
N+T TC W C+++ ++ +
Sbjct: 292 NQTITCPIKVSWRGNYSCLKVDLIFT 317
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.2 bits (45), Expect = 6.3
Identities = 6/26 (23%), Positives = 13/26 (50%)
Frame = -1
Query: 530 NRTXTCKSACRWANXLKCIEIGVLMS 453
N+T TC W C+++ ++ +
Sbjct: 241 NQTITCPIKVSWRGNYSCLKVDLIFT 266
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,949
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 32
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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